DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and CG17328

DIOPT Version :9

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_609786.2 Gene:CG17328 / 34962 FlyBaseID:FBgn0028895 Length:413 Species:Drosophila melanogaster


Alignment Length:495 Identity:108/495 - (21%)
Similarity:169/495 - (34%) Gaps:175/495 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RVCRFCLTE-QKLASIFEENPRVKTTANLP-LQIMAITAIEVYAGDGMPGHICLECRLLFEHCYR 78
            ::||.||.| ..:.||:..:     .|.:| :.:|....|.|:..||:|..||..|.......:.
  Fly     7 KICRVCLEELHPVTSIYSTD-----FAMMPSVMLMQCAKIRVFKTDGLPSVICNNCIYRLGVAFH 66

  Fly    79 FKQMCKRAETLLRQY-PLTGNWPSPLEKPRAPMTMVASKKLLVVPAKTAEPSETPKKLLNTMAKS 142
            |||.|:.::..|||| .:..:|    .:..|..|....|.||                       
  Fly    67 FKQECENSDLRLRQYLGILESW----RQDAATNTDFVEKPLL----------------------- 104

  Fly   143 SSQVIIEDVQVLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQSMLEDMASELEKEF 207
                                        |:|        |:::|   :.|.:.:....|..:::.
  Fly   105 ----------------------------PQR--------DSDEE---EPVDAKVSKRRSRYQRKP 130

  Fly   208 PDIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRDDSGNVAIVTEVLDSDLPLDDQD 272
            |:..:|..| ||                        .||:..                       
  Fly   131 PEEHKKRGP-KP------------------------VPKMPH----------------------- 147

  Fly   273 DPTKNAEKVATDVFPCPDCERSFPLQQLLEIHRLNHTRSRSFQCLLCEKSFFSKYDLAKHNFVHT 337
                          .|.:|.:||.....|..|...||..:.:||..|.:.|..||:|..|...||
  Fly   148 --------------TCYECHKSFKCIAQLTQHIRTHTGEKPYQCSFCIQRFAQKYNLKVHERTHT 198

  Fly   338 GERPFKCAICSKAFTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAERHQKKRPFQCGV 402
            |::||:|.||||.|:.......|::.|..|...:|..|:|.|.:..::.||...|...:...|.|
  Fly   199 GDKPFQCEICSKQFSALGNFQAHQKIHLGVRDQVCSLCQKGFYTAGDLSKHMITHTGIKNHHCDV 263

  Fly   403 CTKSFAFKQGLERHE-TVH----STN------------------------LPFPCQHCERSFSTA 438
            |.|:|:.::.:..|: .:|    |||                        ..|.|..|:::|.||
  Fly   264 CGKAFSRRRDMRTHKLKLHPLESSTNHDIVDDDDDEAIDTDPVGLDTLDHAHFKCPDCDKAFDTA 328

  Fly   439 SKLARHLVAHAGKR---------AYPCKYCHKSYMLSHHL 469
            ..|:.|...||...         |.|..: |..:...|||
  Fly   329 DSLSLHFRTHAANNNLLNLPLPPAPPMSH-HYHHDALHHL 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871 23/76 (30%)
COG5048 <281..506 CDD:227381 63/227 (28%)
C2H2 Zn finger 288..308 CDD:275368 6/19 (32%)
C2H2 Zn finger 316..336 CDD:275368 7/19 (37%)
zf-H2C2_2 328..353 CDD:290200 13/24 (54%)
C2H2 Zn finger 344..364 CDD:275368 7/19 (37%)
C2H2 Zn finger 372..388 CDD:275370 4/15 (27%)
C2H2 Zn finger 400..420 CDD:275368 6/20 (30%)
C2H2 Zn finger 428..448 CDD:275368 7/19 (37%)
C2H2 Zn finger 456..476 CDD:275368 4/14 (29%)
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
CG17328NP_609786.2 zf-AD 8..80 CDD:214871 23/76 (30%)
COG5048 146..>211 CDD:227381 25/101 (25%)
C2H2 Zn finger 149..169 CDD:275368 6/19 (32%)
C2H2 Zn finger 177..197 CDD:275368 7/19 (37%)
zf-H2C2_2 189..213 CDD:404364 12/23 (52%)
C2H2 Zn finger 205..225 CDD:275368 7/19 (37%)
C2H2 Zn finger 233..253 CDD:275368 6/19 (32%)
zf-H2C2_2 245..270 CDD:404364 8/24 (33%)
C2H2 Zn finger 261..282 CDD:275368 6/20 (30%)
C2H2 Zn finger 318..338 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449809
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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