DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and crol

DIOPT Version :9

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_001245993.1 Gene:crol / 34592 FlyBaseID:FBgn0020309 Length:962 Species:Drosophila melanogaster


Alignment Length:315 Identity:97/315 - (30%)
Similarity:135/315 - (42%) Gaps:32/315 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 FPCPDCERSFPLQQLLEIHRLNHTRSRSFQCLLCEKSFFSKYDLAKHNFVHTGERPFKCAICSKA 350
            |.|..|.:||..::....|.|.||.....:|..|.|:|..|..|..|...||||.|.:|:.|.|.
  Fly   417 FRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKT 481

  Fly   351 FTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLER 415
            ||||..|..|.|.||....|.|.||.|.|..:..|..|..:|..:.|.:|..|||:|..|:.|..
  Fly   482 FTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTN 546

  Fly   416 HETVHSTNLPFPCQHCERSFSTASKLARHLVAHAGKRAYPCKYCHKSYMLSHHLSRHLRTHT--- 477
            |...|:.:.|..|.:|:::|:....|..|:..|.|...:.|:||.|::....||:.|:|.|:   
  Fly   547 HVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDN 611

  Fly   478 ------------------------QTSDASFVCSECKVSYSNYNDLLDHALIHATAS-----LKC 513
                                    .|.|..|.|..|..|:....:||.|...|....     ..|
  Fly   612 PHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFAC 676

  Fly   514 PMCRKQIEDIDSVESHMDQHKQSERHACEFCDHIFLTQKCLQRHIEDDHVVEMEP 568
            ..|.|.......:.|||..|...:.|||..|...|:.:..|:||::.:|...|.|
  Fly   677 EKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMP 731

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871
COG5048 <281..506 CDD:227381 78/246 (32%)
C2H2 Zn finger 288..308 CDD:275368 6/19 (32%)
C2H2 Zn finger 316..336 CDD:275368 7/19 (37%)
zf-H2C2_2 328..353 CDD:290200 11/24 (46%)
C2H2 Zn finger 344..364 CDD:275368 10/19 (53%)
C2H2 Zn finger 372..388 CDD:275370 6/15 (40%)
C2H2 Zn finger 400..420 CDD:275368 8/19 (42%)
C2H2 Zn finger 428..448 CDD:275368 5/19 (26%)
C2H2 Zn finger 456..476 CDD:275368 8/19 (42%)
C2H2 Zn finger 486..506 CDD:275368 6/19 (32%)
HARE-HTH <566..625 CDD:294801 2/3 (67%)
crolNP_001245993.1 C2H2 Zn finger 223..243 CDD:275368
C2H2 Zn finger 251..271 CDD:275368
C2H2 Zn finger 279..299 CDD:275368
COG5048 300..723 CDD:227381 94/305 (31%)
C2H2 Zn finger 307..327 CDD:275368
C2H2 Zn finger 335..355 CDD:275368
C2H2 Zn finger 363..383 CDD:275368
C2H2 Zn finger 391..411 CDD:275368
C2H2 Zn finger 419..439 CDD:275368 6/19 (32%)
C2H2 Zn finger 447..467 CDD:275368 7/19 (37%)
C2H2 Zn finger 475..495 CDD:275368 10/19 (53%)
C2H2 Zn finger 503..523 CDD:275368 7/19 (37%)
C2H2 Zn finger 531..551 CDD:275368 8/19 (42%)
C2H2 Zn finger 559..579 CDD:275368 5/19 (26%)
C2H2 Zn finger 587..607 CDD:275368 8/19 (42%)
C2H2 Zn finger 615..636 CDD:275368 0/20 (0%)
C2H2 Zn finger 644..664 CDD:275368 6/19 (32%)
C2H2 Zn finger 676..696 CDD:275368 6/19 (32%)
C2H2 Zn finger 704..722 CDD:275368 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446667
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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