DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and CG17612

DIOPT Version :9

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_608824.1 Gene:CG17612 / 33639 FlyBaseID:FBgn0031597 Length:618 Species:Drosophila melanogaster


Alignment Length:603 Identity:130/603 - (21%)
Similarity:207/603 - (34%) Gaps:151/603 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 IEVYAGDGMPGHICLECRLLFEHCYRFKQMCKRAETLLR-----QYPLTGNWPSPLEKPRAPMTM 112
            :.|..|..:|..:||:|  |....:..|....|.||.:.     :..:.|....| |.|..|...
  Fly    14 LSVKRGGSLPKTLCLQC--LHMDTFGTKHKGPRPETQINDKVHLEMSINGEDGLP-EHPLYPEVQ 75

  Fly   113 VA--------SKKLL---------------VVPAKTAEPSETPKKLLNTMAKSSSQVIIEDVQVL 154
            :.        .||::               :|..:..|.......::......:.:||:||....
  Fly    76 LVVKEEDALIKKKVIEENHIHNEEIIGASNIVDVEVHENHRANNDVILIQDSFAEEVILEDHPAN 140

  Fly   155 ESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQ-------SMLEDMA-----------S 201
            ...::...:||..          ||.|...:.:..:|:|       ..||:.|           .
  Fly   141 NDVIIIQDSVAEE----------ELPVIKEEAIEGEDLQGEYFIITECLEEPAIGSCRVCLEQSD 195

  Fly   202 ELEKEFPDIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRDDSGNVAIVTEVLD--- 263
            .|...|.|..|...|:         ..||::....|||         :.||.:..|....||   
  Fly   196 NLTNIFDDAHQYGIPI---------ATILSQYTGMPVE---------KGDSFSEYICVTCLDVVK 242

  Fly   264 ---SDLP----------------LDDQDDPTKNA----EKVATDVFPCPDCERSFPLQQLLEIHR 305
               .||.                :|....|.||.    |........||.|.:.|.|...|:.|.
  Fly   243 NAFDDLESKENTIQMYRQPKEEIIDIDSIPVKNKPVDYEVTGKPPHRCPQCPKIFLLAAKLQAHI 307

  Fly   306 LNHTRSRS-----FQCLLCEKSFFSKYDLAKHNFVHTG--------ERPFKCAICSKAFTRKALL 357
            ..|..:|:     .:|.:|...:..:..|..|.::|..        |.|::|..|.|.|...:.|
  Fly   308 RTHNETRTTEPPRLKCPMCPSIYMKRGCLEAHMWIHRASDERESELEPPYRCPHCPKLFLYSSFL 372

  Fly   358 HRHERTHTDVPKFI-------CVYCEKPFLSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLER 415
            ..|.:||.||.:.:       |..|...|.....::.|.:.|..:|.|:|.:|..||..:..|:.
  Fly   373 EIHIQTHEDVSQRLSRKSSHKCAQCADVFSDVSSLKDHVKIHAGERTFKCPLCLMSFQEESNLKS 437

  Fly   416 HETVHSTNLPFPCQHCERSFSTASKLARHL-VAHAGKRAYPCKYCHKSYMLSHHLSRHLRTHTQT 479
            |:..|:.   |.|..|.:.|.:.:.|..|. .:|..|..:.|..|.:::...:.|..|:      
  Fly   438 HDCAHTR---FKCHKCSKFFESQNYLDFHFKKSHTTKGPFKCIKCQQTFQKRNGLKEHI------ 493

  Fly   480 SDASFVCSECKVSYSNYNDLLDHALIHATASLKCPMCRKQIEDIDSVESHMDQHKQ----SERHA 540
              :|.||.:...|.|            ......||.|.|:....|:.:.|...||:    .|||.
  Fly   494 --SSQVCVQFLRSKS------------PGQIFPCPKCPKKFSIEDNYQMHHATHKKVKTVIERHN 544

  Fly   541 CEFCDHIFLTQKCLQRHI 558
            |..|...:..:|.|.:||
  Fly   545 CTQCKKSYQNKKLLTKHI 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871 11/43 (26%)
COG5048 <281..506 CDD:227381 57/245 (23%)
C2H2 Zn finger 288..308 CDD:275368 7/19 (37%)
C2H2 Zn finger 316..336 CDD:275368 4/19 (21%)
zf-H2C2_2 328..353 CDD:290200 9/32 (28%)
C2H2 Zn finger 344..364 CDD:275368 6/19 (32%)
C2H2 Zn finger 372..388 CDD:275370 3/15 (20%)
C2H2 Zn finger 400..420 CDD:275368 6/19 (32%)
C2H2 Zn finger 428..448 CDD:275368 5/20 (25%)
C2H2 Zn finger 456..476 CDD:275368 4/19 (21%)
C2H2 Zn finger 486..506 CDD:275368 3/19 (16%)
HARE-HTH <566..625 CDD:294801
CG17612NP_608824.1 zf-AD 187..>246 CDD:285071 15/76 (20%)
C2H2 Zn finger 290..310 CDD:275368 7/19 (37%)
C2H2 Zn finger 323..343 CDD:275370 4/19 (21%)
zf-C2H2_8 356..438 CDD:292531 23/81 (28%)
C2H2 Zn finger 359..379 CDD:275368 6/19 (32%)
C2H2 Zn finger 394..414 CDD:275368 4/19 (21%)
C2H2 Zn finger 422..438 CDD:275368 5/15 (33%)
C2H2 Zn finger 447..463 CDD:275368 4/15 (27%)
C2H2 Zn finger 476..505 CDD:275368 7/36 (19%)
C2H2 Zn finger 513..533 CDD:275368 6/19 (32%)
C2H2 Zn finger 545..565 CDD:275368 6/18 (33%)
C2H2 Zn finger 568..584 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449789
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 116 1.000 Inparanoid score I3381
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.080

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