DRSC/TRiP Functional Genomics Resources

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Protein Alignment pita and CG2116

DIOPT Version :10

Sequence 1:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster
Sequence 2:NP_572444.2 Gene:CG2116 / 31735 FlyBaseID:FBgn0030003 Length:598 Species:Drosophila melanogaster


Alignment Length:633 Identity:145/633 - (22%)
Similarity:250/633 - (39%) Gaps:137/633 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 VVPAKTAEPSETPK---KLLNTMAKSS------------SQVIIEDVQVLESAMVTPRT----VA 165
            |:||.:....|..:   :::||...::            ..:||.:...:|..|:..:.    :.
  Fly    15 VLPANSDYSDEDNRGNVRVINTSDDATYVLLDNLGNEFEEDIIIVNENGVEKEMLMSKELRDFIV 79

  Fly   166 GSSPVPRRSHAYELKVDNN------QELSMDDVQSMLEDMASELEKE-----FPDIPQKASPVKP 219
            |       |...:|..|..      :||.|.:|..::| :..|:|:|     :.|...:.|...|
  Fly    80 G-------SRVKDLTDDEQMPQFVVRELDMSEVGDLVE-VEPEMEQEADYGDYGDYEHEPSYGHP 136

  Fly   220 KVLNKSSIRILNKGPAA-----PVEPRLATPKVK-----RDDSGNVAIVTEVLDSDLPLDDQDDP 274
            :. |:.....|:..|.:     |..||..:|.|:     |:.:..:|:.:.|  |....||.|..
  Fly   137 RD-NERVEEDLDMYPPSSPSLPPSPPRPPSPVVQPASKARNSARQIALRSFV--SQKNNDDDDGS 198

  Fly   275 TKNAEKVATDVFPCPDCERSFPLQQLLEIHRLNHTRSRSFQCLLCEKSFFSK-----YDLAKHNF 334
            .|..:                |.:::||..: ...|...|..|:.....|.:     .:.:..:.
  Fly   199 VKEVK----------------PSEKMLEEFK-GPRRYMLFDDLIATIVDFDEDSTPLVEFSMISD 246

  Fly   335 VHTGERPFKCAICSKAFTRKALLHRHERTHTDVP---KFICVYCEKPFLSRQEMEKHAERHQKKR 396
            :...:.|.:|.||.... .|:.|.:|.:||. ||   ::.|:||.:.:...:.:..||.||...|
  Fly   247 IMDEKLPVECGICPDVM-HKSKLSKHHKTHL-VPGTNRYACIYCTETYRDCKYLAGHARRHMGIR 309

  Fly   397 PFQCGVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFSTASKLARHLVA-HAGKRAYPCKYCH 460
            |:.|.:||..|:.||.|..|...........|:.|.::|:..::|.||..| |..||.:.|:||.
  Fly   310 PYVCELCTLYFSTKQDLRVHNQRRHLEKEHICEVCGKTFAQNTQLKRHREATHEKKRRFQCEYCQ 374

  Fly   461 KSYMLSHHLSRHLRTHTQTSDASFVCSECKVSYSNYNDLLDHAL-IH-ATASLKCPMCRKQIEDI 523
            |:|..:..|..|:|...........|..|.:...:.:.:..|.. :| :..:..|.:|:::..||
  Fly   375 KAYYKNFSLQEHIRNVHMGKRRMLKCPFCGMQCRDAHKMARHRKEMHLSQGTYVCHLCQEEFTDI 439

  Fly   524 DSVESHMDQHKQSERHACEFCDHIFL----------TQKCLQRHI--EDDHVVEMEPYQNEF-ED 575
                |:.|.||:|.:  |......|:          ::....|::  :||....|.|.|.|: ||
  Fly   440 ----SYFDAHKRSIQ--CRSNTRRFVNADGNREGSDSESISGRNMNGQDDDYDGMGPLQEEYDED 498

  Fly   576 DG--------EGEGG------VDEKEE---HLDDFEDMDNVKQEEFVTEYLEDDALYEDHLDDSD 623
            ||        |.:|.      :||.|:   .|.|::|      :..:.|...|   .||..:|.|
  Fly   499 DGLLVEDNQPEEQGSPSNRQYLDESEQQYVQLSDYDD------QHLLVENAVD---AEDGGEDLD 554

  Fly   624 ESFTPPPPKQRKTNPPKDAQQSVRQTRSRDAQ-------RITQKTGKN 664
            |..|    :.:..|..:...|..:|...|...       .||.||..|
  Fly   555 ELLT----EDQYFNAVQQHHQQHQQHHGRGQDYNDELIYEITLKTEDN 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitaNP_611806.3 zf-AD 17..92 CDD:214871
COG5048 <281..506 CDD:227381 56/234 (24%)
C2H2 Zn finger 288..308 CDD:275368 3/19 (16%)
C2H2 Zn finger 316..336 CDD:275368 2/24 (8%)
C2H2 Zn finger 344..364 CDD:275368 6/19 (32%)
C2H2 Zn finger 372..388 CDD:275370 3/15 (20%)
C2H2 Zn finger 400..420 CDD:275368 8/19 (42%)
C2H2 Zn finger 428..448 CDD:275368 7/20 (35%)
C2H2 Zn finger 456..476 CDD:275368 8/19 (42%)
C2H2 Zn finger 486..506 CDD:275368 3/20 (15%)
CG2116NP_572444.2 C2H2 Zn finger 256..275 CDD:275368 6/19 (32%)
zf-C2H2_8 257..339 CDD:464935 26/83 (31%)
C2H2 Zn finger 285..305 CDD:275368 5/19 (26%)
PHA00733 <308..357 CDD:177301 14/48 (29%)
C2H2 Zn finger 313..334 CDD:275368 8/20 (40%)
C2H2 Zn finger 341..362 CDD:275368 7/20 (35%)
C2H2 Zn finger 370..388 CDD:275368 7/17 (41%)
C2H2 Zn finger 400..418 CDD:275370 3/17 (18%)
C2H2 Zn finger 429..447 CDD:275368 7/21 (33%)
Blue background indicates that the domain is not in the aligned region.

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