DRSC/TRiP Functional Genomics Resources

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Protein Alignment His1:CG33825 and H1f6

DIOPT Version :9

Sequence 1:NP_001027319.1 Gene:His1:CG33825 / 3772715 FlyBaseID:FBgn0053825 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_036711.1 Gene:H1f6 / 24438 RGDID:2778 Length:208 Species:Rattus norvegicus


Alignment Length:235 Identity:83/235 - (35%)
Similarity:114/235 - (48%) Gaps:39/235 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDSAVATSASPVAAPPATVEKKVVQKKASGSAGTKAKKASA-TPSHPPTQQMVDASIKNLKERG 64
            ||::|.|.|::.|.||        |:|.|:...|.|...|:| .|......:::..::...:||.
  Rat     1 MSETAPAASSTLVPAP--------VEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERA 57

  Fly    65 GSSLLAIKKYITAT-YKCDAQKLAPFIKKYLKSAVVNGKLIQTKGKGASGSFKLSASAKKEKDPK 128
            |.||.|:||.:.|. |  |.:|....||..||..|..|.|:||||.|||||||||..|....| |
  Rat    58 GMSLAALKKALAAAGY--DVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGND-K 119

  Fly   129 AKSKVLSAEKKVQSKKVASKKIGVS----SKKTAVGAADKKPKAKKAVATKKTAENKKTEKAKAK 189
            .|.|        :|....:||:|:|    |.|::.....|||   ||..||.:...:||:.||..
  Rat   120 GKGK--------KSASAKAKKLGLSRASRSPKSSKTKVVKKP---KATPTKGSGSRRKTKGAKGL 173

  Fly   190 DAKKTGIIKSKPAATKAKVT---AAKPKAVVAKASKAKPA 226
            ..:|:      ||  ||:.|   :.|.|.|:.|....|.|
  Rat   174 QQRKS------PA--KARATNSNSGKSKMVMQKTDLRKAA 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
His1:CG33825NP_001027319.1 Linker_histone 46..118 CDD:278939 30/72 (42%)
H1f6NP_036711.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39 16/45 (36%)
H15 36..116 CDD:238028 34/81 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..208 50/133 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 61 1.000 Domainoid score I10170
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 122 1.000 Inparanoid score I4648
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000079
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11467
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.060

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