Protein Alignment wmd and AT1G52730

DIOPT Version :10

• Sequence 1: NP_611804.1
• Gene: wmd / 37727
• FlyBaseID: FBgn0034876
• Length: 328
• Species: Drosophila melanogaster
• Sequence 2: NP_175682.2
• Gene: AT1G52730 / 841706
• AraportID: AT1G52730
• Length: 343
• Species: Arabidopsis thaliana
• Alignment Length: 320
• Identity: 150/320 - (46%)
• Similarity: 207/320 - (64%)
• Gaps: 14/320 - (4%)

  Fly     9 IPLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGDTGDWVGTFEGHKGAVWNATLNRN 73
            ||..|.||:||||.|.:|.|...|:|||||.||..||||:|:||||:|||||||||||::.|:.|
plant     8 IPQVCHGHSRPVVDLFYSPITPDGFFLISASKDSHPMLRNGETGDWIGTFEGHKGAVWSSCLDNN 72

  Fly    74 ATLAASGAADFTGKVWNAVTGAEIHSFQHKHIVKSVAFDRDSENIVTGSNEKLVRVFNLEQPEAQ 138
            |..|||.:|||:.|:|:|:||..:|||:|||||::.||..|:::::||..||::|||::.:.:|.
plant    73 ALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSEDTKSLLTGGFEKILRVFDMNRLDAP 137

  Fly   139 PEEYAGHTGAIKRALFCRGDKCIISAAED-KTVRLWDRMTGIEVQRLQFNSNPNSLEISSDNHIL 202
            |.|.....|:|:...:...|:.|:|:..| ..|||||..:|..||.|:..|...|.|:|.|...:
plant   138 PTEVDKSPGSIRTLTWLHSDQTILSSCTDIGGVRLWDVRSGKIVQTLETKSPVTSAEVSQDGRYI 202

  Fly   203 TISHGSSISFWEIDTLKKLKEVKVPTNVASASLHPDK-HVFVCGGEDFKMYKFDYITGNEIESFK 266
            |.:.||::.||:.:....:|...:|.|:.||||.|.. ..||.||||..:..||:.||.||...|
plant   203 TTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSGEKFVAGGEDMWVRVFDFYTGEEIGCNK 267

  Fly   267 GHFGPVHSVKFSPDGELYASGSEDGTLRLWQTTVGKTYGLWKCTEPADLGNSISSPREVQ 326
            ||.||||.|:|:|.|..|||||||||:|:||||            ||:...:.:|.|.|:
plant   268 GHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTT------------PANPEENETSSRRVK 315

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
wmd	NP_611804.1	WD40	<7..299	CDD:441893	143/291 (49%)
		WD40 repeat	25..60	CDD:293791	22/34 (65%)
		WD40 repeat	66..101	CDD:293791	17/34 (50%)
		WD40 repeat	108..144	CDD:293791	13/35 (37%)
		WD40 repeat	150..186	CDD:293791	13/36 (36%)
		WD40 repeat	190..225	CDD:293791	10/34 (29%)
		WD40 repeat	231..266	CDD:293791	17/35 (49%)
		WD40 repeat	272..308	CDD:293791	20/35 (57%)
AT1G52730	NP_175682.2	WD40	<7..300	CDD:441893	143/291 (49%)
		WD40 repeat	106..143	CDD:293791	13/36 (36%)
		WD40 repeat	148..185	CDD:293791	13/36 (36%)
		WD40 repeat	191..225	CDD:293791	10/33 (30%)
		WD40 repeat	230..267	CDD:293791	17/36 (47%)
		WD40 repeat	273..314	CDD:293791	24/52 (46%)