DRSC/TRiP Functional Genomics Resources

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Protein Alignment wmd and AT3G15610

DIOPT Version :10

Sequence 1:NP_611804.1 Gene:wmd / 37727 FlyBaseID:FBgn0034876 Length:328 Species:Drosophila melanogaster
Sequence 2:NP_566519.1 Gene:AT3G15610 / 820803 AraportID:AT3G15610 Length:341 Species:Arabidopsis thaliana


Alignment Length:291 Identity:147/291 - (50%)
Similarity:200/291 - (68%) Gaps:2/291 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 PLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGDTGDWVGTFEGHKGAVWNATLNRNA 74
            ||.|.||:||||.|.:|.|...|:|||||.||..||||:|:||||:|||||||||||::.|:.||
plant     9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSQPMLRNGETGDWIGTFEGHKGAVWSSCLDNNA 73

  Fly    75 TLAASGAADFTGKVWNAVTGAEIHSFQHKHIVKSVAFDRDSENIVTGSNEKLVRVFNLEQPEAQP 139
            ..|||.:|||:.|:|:|:||..:|||:|||||::.||.:|::.::||..||::|||:|.:.:|.|
plant    74 LRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSQDTKYLITGGFEKILRVFDLNRLDAPP 138

  Fly   140 EEYAGHTGAIKRALFCRGDKCIISAAED-KTVRLWDRMTGIEVQRLQFNSNPNSLEISSDNHILT 203
            .|.....|:|:...:..||:.|:|:..| ..|||||..:|..||.|:..|...|.|:|.|...:|
plant   139 TEIDKSPGSIRTLTWLHGDQTILSSCTDIGGVRLWDVRSGKIVQTLETKSPVTSAEVSQDGRYIT 203

  Fly   204 ISHGSSISFWEIDTLKKLKEVKVPTNVASASLHPDK-HVFVCGGEDFKMYKFDYITGNEIESFKG 267
            .:.||::.||:.:....:|...:|.|:.||||.|.. :.||.||||..:..||:.||.||...||
plant   204 TADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSGNKFVAGGEDMWVRLFDFHTGKEIGCNKG 268

  Fly   268 HFGPVHSVKFSPDGELYASGSEDGTLRLWQT 298
            |.||||.|:|:|.||.|||||||||:|:|||
plant   269 HHGPVHCVRFAPTGESYASGSEDGTIRIWQT 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wmdNP_611804.1 WD40 <7..299 CDD:441893 147/291 (51%)
WD40 repeat 25..60 CDD:293791 22/34 (65%)
WD40 repeat 66..101 CDD:293791 17/34 (50%)
WD40 repeat 108..144 CDD:293791 14/35 (40%)
WD40 repeat 150..186 CDD:293791 14/36 (39%)
WD40 repeat 190..225 CDD:293791 10/34 (29%)
WD40 repeat 231..266 CDD:293791 17/35 (49%)
WD40 repeat 272..308 CDD:293791 20/27 (74%)
AT3G15610NP_566519.1 WD40 <7..299 CDD:441893 145/289 (50%)
WD40 repeat 20..59 CDD:293791 24/38 (63%)
WD40 repeat 106..143 CDD:293791 14/36 (39%)
WD40 repeat 148..185 CDD:293791 14/36 (39%)
WD40 repeat 191..225 CDD:293791 10/33 (30%)
WD40 repeat 230..267 CDD:293791 17/36 (47%)

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