DRSC/TRiP Functional Genomics Resources

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Protein Alignment wmd and TRIP-1

DIOPT Version :10

Sequence 1:NP_611804.1 Gene:wmd / 37727 FlyBaseID:FBgn0034876 Length:328 Species:Drosophila melanogaster
Sequence 2:NP_182151.1 Gene:TRIP-1 / 819236 AraportID:AT2G46280 Length:328 Species:Arabidopsis thaliana


Alignment Length:317 Identity:99/317 - (31%)
Similarity:156/317 - (49%) Gaps:34/317 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 PLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGDTGDWVGTFEGHKGAVWNATLNRNA 74
            |:...||.||:..|.::   ..|..|.|..||.:|.|...|.|:.:||:.||.||||...::|::
plant     3 PILMKGHERPLTFLRYN---REGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDS 64

  Fly    75 TLAASGAADFTGKVWNAVTGAEIHSFQHKHIVKSVAFDRDSENIVTGSNEKLVRVFNL------E 133
            :...:|:||.|.|:|:..:|.|:.:|:.....:||.|.......|..::..:.|...:      |
plant    65 SRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRTAAIHVKRIAE 129

  Fly   134 QPEAQPEEYA------GHTGAIKRALFCRGDKCIISAAEDKTVRLWDRMTGIEV----QRLQFNS 188
            .||.|..|..      .....|.||::...::.|:|..|||.:|:||..||..:    :.:....
plant   130 DPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKK 194

  Fly   189 NPNSL-EISSDNHILTISHGSSISFWEIDTLKKLKEVKVPTNVASASLHP-DKHVFVCGGED--- 248
            :..|| :.:.|:|.||.|...:...|::.||..||.......|.:.||.| ..||.:.||:|   
plant   195 DITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSPLLNHVVLGGGQDASA 259

  Fly   249 ----------FKMYKFDYITGNEIESFKGHFGPVHSVKFSPDGELYASGSEDGTLRL 295
                      |:...:|.|...||...||||||::::.|:|||:.::||.|||.:||
plant   260 VTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRL 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wmdNP_611804.1 WD40 <7..299 CDD:441893 99/317 (31%)
WD40 repeat 25..60 CDD:293791 11/34 (32%)
WD40 repeat 66..101 CDD:293791 10/34 (29%)
WD40 repeat 108..144 CDD:293791 10/47 (21%)
WD40 repeat 150..186 CDD:293791 12/39 (31%)
WD40 repeat 190..225 CDD:293791 12/35 (34%)
WD40 repeat 231..266 CDD:293791 13/48 (27%)
WD40 repeat 272..308 CDD:293791 11/24 (46%)
TRIP-1NP_182151.1 WD40 <2..316 CDD:441893 97/315 (31%)
WD40 repeat 13..50 CDD:293791 12/39 (31%)
WD40 repeat 56..92 CDD:293791 11/35 (31%)
WD40 repeat 97..141 CDD:293791 10/43 (23%)
WD40 repeat 152..187 CDD:293791 12/34 (35%)
WD40 repeat 196..233 CDD:293791 12/36 (33%)
WD40 repeat 237..280 CDD:293791 12/42 (29%)
WD40 repeat 293..316 CDD:293791 9/22 (41%)

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