DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wmd and STRAP

DIOPT Version :9

Sequence 1:NP_001097436.1 Gene:wmd / 37727 FlyBaseID:FBgn0034876 Length:328 Species:Drosophila melanogaster
Sequence 2:NP_009109.3 Gene:STRAP / 11171 HGNCID:30796 Length:350 Species:Homo sapiens


Alignment Length:318 Identity:193/318 - (60%)
Similarity:243/318 - (76%) Gaps:1/318 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LRQIPLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGDTGDWVGTFEGHKGAVWNATL 70
            :||.||||||||||||.|.||.|...|||||||||||.||||.||||||:|||.|||||||.|||
Human     3 MRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATL 67

  Fly    71 NRNATLAASGAADFTGKVWNAVTGAEIHSFQHKHIVKSVAFDRDSENIVTGSNEKLVRVFNLEQP 135
            |::||.||:.|||||.|||:||:|.|:.:..||||||:|.|.:||..::||..:||:|:::|.:|
Human    68 NKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKP 132

  Fly   136 EAQPEEYAGHTGAIKRALFCRGDKCIISAAEDKTVRLWDRMTGIEVQRLQFNSNPNSLEISSDNH 200
            ||:|:|.:|||..||:||:|..||.|:| |:||||||||..|..||:.|.||.:.:|:|...:..
Human   133 EAEPKEISGHTSGIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSLNFNMSVSSMEYIPEGE 196

  Fly   201 ILTISHGSSISFWEIDTLKKLKEVKVPTNVASASLHPDKHVFVCGGEDFKMYKFDYITGNEIESF 265
            ||.|::|.||:|....:|..:|..:.|..:.||||||:|...|.||||||:||:||.:|.|:||:
Human   197 ILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESY 261

  Fly   266 KGHFGPVHSVKFSPDGELYASGSEDGTLRLWQTTVGKTYGLWKCTEPADLGNSISSPR 323
            ||||||:|.|:||||||||||||||||||||||.||||||||||..|.:....::.|:
Human   262 KGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPK 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wmdNP_001097436.1 WD40 12..297 CDD:238121 174/284 (61%)
WD40 repeat 25..60 CDD:293791 27/34 (79%)
WD40 repeat 66..101 CDD:293791 21/34 (62%)
WD40 repeat 108..144 CDD:293791 15/35 (43%)
WD40 repeat 150..186 CDD:293791 21/35 (60%)
WD40 repeat 190..225 CDD:293791 11/34 (32%)
WD40 repeat 231..266 CDD:293791 22/34 (65%)
WD40 repeat 272..308 CDD:293791 31/35 (89%)
STRAPNP_009109.3 WD40 9..293 CDD:238121 174/284 (61%)
WD 1 12..56 34/43 (79%)
WD 2 57..96 27/38 (71%)
WD 3 98..137 19/38 (50%)
WD40 repeat 104..141 CDD:293791 16/36 (44%)
WD 4 141..179 24/38 (63%)
WD40 repeat 146..181 CDD:293791 21/35 (60%)
WD 5 180..212 12/31 (39%)
WD40 repeat 187..221 CDD:293791 11/33 (33%)
WD 6 221..262 23/40 (58%)
WD40 repeat 226..262 CDD:293791 22/35 (63%)
WD 7 263..302 34/38 (89%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165159690
Domainoid 1 1.000 86 1.000 Domainoid score I8110
eggNOG 1 0.900 - - E1_KOG0278
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H43881
Inparanoid 1 1.050 412 1.000 Inparanoid score I1862
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53528
OrthoDB 1 1.010 - - D1239790at2759
OrthoFinder 1 1.000 - - FOG0005164
OrthoInspector 1 1.000 - - oto89507
orthoMCL 1 0.900 - - OOG6_103369
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5798
SonicParanoid 1 1.000 - - X3682
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.700

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