DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Menl-2 and Me1

DIOPT Version :9

Sequence 1:NP_001027424.2 Gene:Menl-2 / 3772692 FlyBaseID:FBgn0029153 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_036732.3 Gene:Me1 / 24552 RGDID:3074 Length:572 Species:Rattus norvegicus


Alignment Length:561 Identity:242/561 - (43%)
Similarity:352/561 - (62%) Gaps:10/561 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 ITRPDWHVVMNGKYNKGLAFTIKERQRLGIMGLMPCSVRSMDDQMNAALANFEARPTDIARFTYL 98
            :|| |.|:      ||.||||::|||:|.|.||:|..:.:.:.|:...:.|||...:|..|:..|
  Rat    18 LTR-DPHL------NKDLAFTLEERQQLNIHGLLPPCIVNQEIQVLRVIKNFERLNSDFDRYLLL 75

  Fly    99 SAVHHRHRRLYYRFIKENIEKSLPIVYTPTVGDVVATYGLNFQQAISLFISIHDKGHIRDLMHNW 163
            ..:..|:.:|:|..:..|:||.:|||||||||.....|.|.|::...|||||||||||..:::.|
  Rat    76 MDLQDRNEKLFYSVLMSNVEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVLNAW 140

  Fly   164 VDEGVKAICVTDGGRVLGLGDMGANAMGISLGKMILYTALGSIPPSTLMPVCLDVGTDNQALLQD 228
            .::.||||.||||.|:|||||:|.|.|||.:||:.||||.|.:.|...:|:.|||||:|:.||:|
  Rat   141 PEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKD 205

  Fly   229 PLYVGARIPRVKGPEYDELVDEFMESAVKCFGNNTFIHFEDFATPNALKFLEKYQYKYCCFNDDI 293
            |||:|.|..||:|||||..:|||||:|...:|.|..|.|||||..||.:.|.||:.|||.|||||
  Rat   206 PLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCLIQFEDFANLNAFRLLNKYRNKYCTFNDDI 270

  Fly   294 QGTGATGLAAFINVERITGRKLEDTVFLFVGAGSAALGIANMLAMELEVRGIPAEEATKNIYLMD 358
            |||.:..:|..:...|||..||.|...||.|||.||||||:::.|.:|..|:..|:|.:.|:|:|
  Rat   271 QGTASVAVAGLLAALRITKNKLSDQTVLFQGAGEAALGIAHLIVMAMEKEGLSKEKARQKIWLVD 335

  Fly   359 VNGILTPESPNPPEMGKIFIKSMEPMKDMMAVLKKLKPSVLVGATGVGGIFNEEVLKTMAKNHER 423
            ..|::.....:..|..::|....|.||::.|:::|:||:.|:|...:||.|.|::||.||..:||
  Rat   336 SKGLIVKGRASLTEEKEVFAHEHEEMKNLEAIVQKIKPTALIGVAAIGGAFTEQILKDMAAFNER 400

  Fly   424 PAVFPLSNPTANSECTAEQAFTHTEGRVLFGSGSPFPPVVI-NGKRYRPAQANNCLTFPGIALAA 487
            |.:|.|||||:.:||:||:.:..|:||.:|.|||||.||.: :|:...|.|.||...|||:||..
  Rat   401 PIIFALSNPTSKAECSAEECYKVTKGRAIFASGSPFDPVTLPDGRTLFPGQGNNSYVFPGVALGV 465

  Fly   488 ITAKARYLPNEVFSVVSHELARNTPQELLDEGTLFPPIKDAHNVAFNVGVAMTQYLIDNDLSNVY 552
            :....|::.:.||...:..:::....:.|:||.|:||:....:|:..:.|.:.|......::.||
  Rat   466 VACGLRHINDSVFLTTAEVISQQVSDKHLEEGRLYPPLNTIRDVSLKIAVKIVQDAYKEKMATVY 530

  Fly   553 PKPDDICEFVKRSLYKFDYRNSLPTTWDYPVEPPTPKPKTK 593
            |:|.:..|||...:|..:|...||..:.:|.|  ..|.:||
  Rat   531 PEPQNKEEFVSSQMYSTNYDQILPDCYSWPEE--VQKIQTK 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Menl-2NP_001027424.2 PLN03129 8..573 CDD:215594 235/539 (44%)
malic 102..283 CDD:278802 97/180 (54%)
NADB_Rossmann 293..567 CDD:304358 103/274 (38%)
Me1NP_036732.3 PLN03129 11..551 CDD:215594 235/539 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353178
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0281
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60768
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000475
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100205
Panther 1 1.100 - - O PTHR23406
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X340
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.710

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