DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawn and SAMC2

DIOPT Version :10

Sequence 1:NP_001027071.1 Gene:Shawn / 3772641 FlyBaseID:FBgn0031039 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_564436.4 Gene:SAMC2 / 840304 AraportID:AT1G34065 Length:345 Species:Arabidopsis thaliana


Alignment Length:383 Identity:82/383 - (21%)
Similarity:145/383 - (37%) Gaps:104/383 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 AMAAASSQNPSK----------ATMTDPRFRIRPLQQ--VASACTGAMVTACFMTPLDVIKTRLQ 68
            |:|..|..:|.|          ....||...:|.|.:  :.....|.:|.|. :.|:|.||||:|
plant    44 ALAFKSINDPIKNQINSCAAICVKQDDPCHFLRVLYESLITGGLAGVVVEAA-LYPIDTIKTRIQ 107

  Fly    69 AQQQALLSNKCFLYCNGLMDHICPCGPDTPNPAAAKPAPRFSGTIDAFIKISRTEG---IGSLWS 130
                                                              ::|..|   ...|:|
plant   108 --------------------------------------------------VARDGGKIIWKGLYS 122

  Fly   131 GLSPTLISALPSTIIYFVAYEQFKARFTDIHYKYTRRPDTIAHDIPHPIPFLVPLLAGVSGRILA 195
            ||...|:..||::.::|..||..|.:...:              :|..:..:..|.||..|..::
plant   123 GLGGNLVGVLPASALFFGVYEPTKQKLLKV--------------LPDNLSAVAHLAAGALGGAVS 173

  Fly   196 VTCVSPVELIRTKMQSQRMTHAEMFGTIRQVVQSQGVLGLWRGLPPTILRDVPFSGIYWTCYEYL 260
            .....|.|:::.:||:.:...|.  ..:|.::..:|..|::.|....:|||:||..:.:..||.|
plant   174 SIVRVPTEVVKQRMQTGQFVSAP--DAVRLIIAKEGFGGMYAGYGSFLLRDLPFDALQFCVYEQL 236

  Fly   261 KSSFGVV------EPTFSFSFAAGAISGSVAATITTPFDVVKTHEQIE-FGEKFIFSDNPPKQVA 318
            :..:.:.      :|.   :...||.:|:|...:|||.||:||...:: .|.::           
plant   237 RIGYKLAARRDLNDPE---NAMIGAFAGAVTGVLTTPLDVIKTRLMVQGSGTQY----------- 287

  Fly   319 TKSVAMRLASIYRMGGVPAIFSGLGPRLFKVAPACAIMISSFEYGKSFFYHYNIDQHN 376
             |.|:..:.:|.|..|..|::.|:|||:..:....:|.....|..|......:...||
plant   288 -KGVSDCIKTIIREEGSSALWKGMGPRVLWIGIGGSIFFGVLEKTKQILSERSQKSHN 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawnNP_001027071.1 Mito_carr 39..159 CDD:395101 24/124 (19%)
Mito_carr 178..265 CDD:395101 21/86 (24%)
Mito_carr 268..371 CDD:395101 26/103 (25%)
SAMC2NP_564436.4 PTZ00168 79..328 CDD:185494 69/330 (21%)

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