DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawn and SAMC1

DIOPT Version :10

Sequence 1:NP_001027071.1 Gene:Shawn / 3772641 FlyBaseID:FBgn0031039 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_568060.1 Gene:SAMC1 / 830101 AraportID:AT4G39460 Length:325 Species:Arabidopsis thaliana


Alignment Length:384 Identity:88/384 - (22%)
Similarity:140/384 - (36%) Gaps:125/384 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 AAASSQNPSKATMTDPRFRI-------------------RPLQQ--VASACTGAMV-TACFMTPL 60
            ::|:|.:.||..|...:.:|                   |.|.:  :|....|.:| ||.:  |:
plant    13 SSATSHDVSKRVMQSSQLKINKGFFASVNTQEDKPFDFFRTLFEGFIAGGTAGVVVETALY--PI 75

  Fly    61 DVIKTRLQAQQQALLSNKCFLYCNGLMDHICPCGPDTPNPAAAKPAPRFSGTIDAFIKISRTEGI 125
            |.||||||                                     |.|..|.|          .:
plant    76 DTIKTRLQ-------------------------------------AARGGGKI----------VL 93

  Fly   126 GSLWSGLSPTLISALPSTIIYFVAYEQFKARFTDIHYKYTRRPD---TIAHDIPHPIPFLVPLLA 187
            ..|:|||:..:...||::.::...||..|.:.....      ||   .:||           |.|
plant    94 KGLYSGLAGNIAGVLPASALFVGVYEPTKQKLLKTF------PDHLSAVAH-----------LTA 141

  Fly   188 GVSGRILAVTCVSPVELIRTKMQSQRMTHAEMFGTIRQVVQSQGVLGLWRGLPPTILRDVPFSGI 252
            |..|.:.|.....|.|:::.:||:.:.|.|.  ..:|.:...:|..||:.|....:|||:||..|
plant   142 GAIGGLAASLIRVPTEVVKQRMQTGQFTSAP--SAVRMIASKEGFRGLYAGYRSFLLRDLPFDAI 204

  Fly   253 YWTCYEYLKSSFGVVEPTFSFSFAA------------GAISGSVAATITTPFDVVKTHEQIEFGE 305
            .:..||.|         ...:..||            ||.:|::...:|||.||:||...::...
plant   205 QFCIYEQL---------CLGYKKAARRELSDPENALIGAFAGALTGAVTTPLDVIKTRLMVQGSA 260

  Fly   306 KFIFSDNPPKQVATKSVAMRLASIYRMGGVPAIFSGLGPRLFKVAPACAIMISSFEYGK 364
            |           ..:.:...:.:|.|..|.||:..|:|||:..:....:|.....|..|
plant   261 K-----------QYQGIVDCVQTIVREEGAPALLKGIGPRVLWIGIGGSIFFGVLESTK 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawnNP_001027071.1 Mito_carr 39..159 CDD:395101 27/122 (22%)
Mito_carr 178..265 CDD:395101 25/86 (29%)
Mito_carr 268..371 CDD:395101 25/109 (23%)
SAMC1NP_568060.1 PTZ00168 55..304 CDD:185494 78/336 (23%)

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