DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawn and slc25a55b

DIOPT Version :10

Sequence 1:NP_001027071.1 Gene:Shawn / 3772641 FlyBaseID:FBgn0031039 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_001003448.1 Gene:slc25a55b / 445054 ZFINID:ZDB-GENE-040801-184 Length:331 Species:Danio rerio


Alignment Length:388 Identity:90/388 - (23%)
Similarity:145/388 - (37%) Gaps:113/388 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 RPLQQVASACTGAM-----VTACFMTPLDVIKTRLQAQQ--QALLSNKCFLYCNGLMDHICPCGP 95
            :|:...|....|.:     ||..|  |:|:.|||||.|:  |.:..|                  
Zfish     4 QPISLPAKLINGGVAGLVGVTCVF--PIDLAKTRLQNQRGSQRVYKN------------------ 48

  Fly    96 DTPNPAAAKPAPRFSGTIDAFIKISRTEGIGSLWSGLSPTLISALPSTIIYFVAYEQFKARFTDI 160
                            .:|..||..|:||...::.|.:..|....|...|...|.:.|:.|.:  
Zfish    49 ----------------MMDCLIKTVRSEGYFGMYRGAAVNLTLVTPEKAIKLAANDFFRQRLS-- 95

  Fly   161 HYKYTRRPDTIAHDIPHPIPFLVPLLAGVSGRILAVTCVSPVELIRTKMQ-------SQR---MT 215
                  |.|.       .:.....:|||....:..|...:|:|:::.::|       .||   :.
Zfish    96 ------RGDL-------KLSVFQEMLAGCGAGMCQVIVTTPMEMLKIQLQDAGRLVAQQRNVPIL 147

  Fly   216 HAEMFG----------------TIRQV---------VQSQGVLGLWRGLPPTILRDVPFSGIYWT 255
            |....|                :||:|         .:::|:.||::||..|::||:|||.:|:.
Zfish   148 HTVKLGAASPVLNYSYSVGPVSSIRKVSAVQIAQELFRTKGIQGLYKGLGATLMRDIPFSVVYFP 212

  Fly   256 CYEYLKSSFGVVEPT---FSFSFAAGAISGSVAATITTPFDVVKTHEQIEFGEKFIFSDNPPKQV 317
            .:.::.......|.:   |.:||.:|.::|..||...:|.|||||..|         |.|.....
Zfish   213 LFAHINQLGKTSEDSDVPFYWSFISGCVAGCTAAVAVSPCDVVKTRLQ---------SLNKSANE 268

  Fly   318 AT-KSVAMRLASIYRMGGVPAIFSGLGPRLFKVAPACAIM-------ISSFEYGKSFFYHYNI 372
            .| ..|...:..|.|..|..|...|.|.|...:||...|.       :..|..|::.|..|::
Zfish   269 DTYNGVVDCIRKIMRKEGPSAFLKGAGCRALVIAPLFGIAQVVYFIGVGEFLLGQTPFNLYSV 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawnNP_001027071.1 Mito_carr 39..159 CDD:395101 29/126 (23%)
Mito_carr 178..265 CDD:395101 26/121 (21%)
Mito_carr 268..371 CDD:395101 32/113 (28%)
slc25a55bNP_001003448.1 Mito_carr 4..96 CDD:395101 29/135 (21%)
Mito_carr 100..214 CDD:395101 26/113 (23%)
Mito_carr 227..312 CDD:395101 28/93 (30%)

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