DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawn and CG4743

DIOPT Version :10

Sequence 1:NP_001027071.1 Gene:Shawn / 3772641 FlyBaseID:FBgn0031039 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_651415.1 Gene:CG4743 / 43101 FlyBaseID:FBgn0039357 Length:297 Species:Drosophila melanogaster


Alignment Length:365 Identity:81/365 - (22%)
Similarity:145/365 - (39%) Gaps:90/365 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 AASAAMAAASSQNPSKATMTDPRFRIRPLQQVASACTGAMVTACFMTPLDVIKTRLQAQQQALLS 76
            ||...:.:|:.....|  |.:|..:::....:.:.....||....:.|:|.:|||||::      
  Fly     2 AAELGLESAAGSVAIK--MQEPVNKLKFFHALVAGGVAGMVVDIALFPIDTVKTRLQSE------ 58

  Fly    77 NKCFLYCNGLMDHICPCGPDTPNPAAAKPAPRFSGTIDAFIKISRTEGIGSLWSGLSPTLISALP 141
                                                    :...|..|...::.||:|....:.|
  Fly    59 ----------------------------------------LGFWRAGGFRGIYKGLAPAAAGSAP 83

  Fly   142 STIIYFVAYEQFKARFTDIHYKYTRRPDTIAHDIPHPIPFLVPLLAGVSGRILAVTCVSPVELIR 206
            :..::|..||..|...:.:         |...|.|:     |.:.|..:..:||.....|||:.:
  Fly    84 TAALFFCTYECGKQFLSSV---------TQTKDSPY-----VHMAAASAAEVLACLIRVPVEIAK 134

  Fly   207 TKMQSQRMTHAEMFGTIRQVVQSQGV-LGLWRGLPPTILRDVPFSGIYWTCYEYLKSSF----GV 266
            .:.|:.:.........:.:..:::|: .||:||...||:|::|||.|.:..:||.|..:    |.
  Fly   135 QRSQTLQGNKQSGLQILLRAYRTEGLKRGLYRGFGSTIMREIPFSLIQFPLWEYFKLQWTPLTGF 199

  Fly   267 VEPTFSFSFAAGAISGSVAATITTPFDVVKTHEQIEFGEKFIFSDNPPKQVATKSVAMR-LASIY 330
            ....||.:. .||::|.::|.:|||.|||||  :|...|:        :.:..:..|.| |..||
  Fly   200 DSTPFSVAL-CGAVAGGISAGLTTPLDVVKT--RIMLAER--------ESLNRRRSARRILHGIY 253

  Fly   331 RMGGVPAIFSGLGPRLFKVAPACAIMISSFEYGKSFFYHY 370
            ...|...:|:|..||:..:.           .|.:||:.:
  Fly   254 LERGFSGLFAGFVPRVLWIT-----------LGGAFFFGF 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawnNP_001027071.1 Mito_carr 39..159 CDD:395101 19/119 (16%)
Mito_carr 178..265 CDD:395101 23/91 (25%)
Mito_carr 268..371 CDD:395101 29/104 (28%)
CG4743NP_651415.1 PTZ00168 25..281 CDD:185494 75/337 (22%)

Return to query results.
Submit another query.