DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawn and Tpc1

DIOPT Version :9

Sequence 1:NP_001027071.1 Gene:Shawn / 3772641 FlyBaseID:FBgn0031039 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_650034.1 Gene:Tpc1 / 41316 FlyBaseID:FBgn0037852 Length:332 Species:Drosophila melanogaster


Alignment Length:373 Identity:93/373 - (24%)
Similarity:147/373 - (39%) Gaps:76/373 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 MAAASSQNPSKATMTDPRFRIR-----PLQQVASACTGAMVTACFMTPLDVIKTRLQAQQQALLS 76
            ||..:.......|.|.|..|.:     .|.|:.:....|.:|.....||||:|.|.|.|.:.|..
  Fly     1 MAVTTGSTSEATTTTTPVPRRKHSTREQLHQMLAGGLSAAITRSTCQPLDVLKIRFQLQVEPLGK 65

  Fly    77 NKCFLYCNGLMDHICPCGPDTPNPAAAKPAP-----RFSGTIDAFIKISRTEGIGSLWSGLSPTL 136
            |                        |||..|     :::....|...|.|.||:.:.|.|.:|..
  Fly    66 N------------------------AAKEGPGALTSKYTSIGQAVKTIYREEGMLAFWKGHNPAQ 106

  Fly   137 ISALPSTIIYFVAYEQFKARFTDIHYKYTRRPDTIAHDIPHPIPFLVPLLAGVSGRILAVTCVSP 201
            :.::...|..|..|||.........|         ..|..|...||....||.:    ||...:|
  Fly   107 VLSIMYGICQFWTYEQLSLMAKQTSY---------LADHQHLSNFLCGAAAGGA----AVIISTP 158

  Fly   202 VELIRTKMQSQRMTHAEMFGT--IRQVVQSQGVLGLWRGLPPTILRDVPFSGIY---------WT 255
            :::|||::.:|..:......|  :..:|:.:|..|::|||...:|:..|..|..         |.
  Fly   159 LDVIRTRLIAQDTSKGYRNATRAVSAIVRQEGPRGMYRGLSSALLQITPLMGTNFMAYRLFSDWA 223

  Fly   256 CYEYLKSSFGVVEPTFSFSFAAGAISGSVAATITTPFDVVKTHEQIEFGEKFIFSDNPPKQVATK 320
            | .:|:.|.....||::. ...||.||.::.||..|||::|...||:.     |..|  :|...:
  Fly   224 C-AFLEVSDRSQLPTWTL-LGLGASSGMLSKTIVYPFDLIKKRLQIQG-----FESN--RQTFGQ 279

  Fly   321 SV-------AMRLASIYRMGGVPAIFSGLGPRLFKVAPACAIMISSFE 361
            ::       .:||.  .|..||..::.|:.|.|.|.:...|:..|.::
  Fly   280 TLQCHGVWDCLRLT--VRQEGVRGLYKGVAPTLLKSSMTTALYFSIYD 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawnNP_001027071.1 Mito_carr 39..159 CDD:278578 31/124 (25%)
Mito_carr 178..265 CDD:278578 25/97 (26%)
Mito_carr 268..371 CDD:278578 28/101 (28%)
Tpc1NP_650034.1 Mito_carr 29..123 CDD:278578 30/117 (26%)
PTZ00169 33..329 CDD:240302 85/341 (25%)
Mito_carr 153..222 CDD:278578 16/68 (24%)
Mito_carr 233..328 CDD:278578 28/103 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45441416
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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