DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawn and colt

DIOPT Version :10

Sequence 1:NP_001027071.1 Gene:Shawn / 3772641 FlyBaseID:FBgn0031039 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_477221.1 Gene:colt / 33470 FlyBaseID:FBgn0019830 Length:306 Species:Drosophila melanogaster


Alignment Length:108 Identity:23/108 - (21%)
Similarity:36/108 - (33%) Gaps:41/108 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 DITNYSLSFTGAARRYKHDYMLT-------------QMY------------IEDRMNPFLV---- 86
            |:|.|..|      .|:..|:.|             .:|            .|..:.|.|:    
  Fly   464 DVTGYDFS------DYRQRYLATVPLSSETHGGEDVGVYASGPGAHLFGGSTEQNVIPLLIAYAA 522

  Fly    87 -----YGWIIVDVP-GQLMALFYSITRKYSVWLAVVMSAVRTL 123
                 :||:...|| ....|...|:::...:.||||.:..|.|
  Fly   523 NIGDEFGWVTSTVPDDDNAASLQSMSQLLPMCLAVVCAFARQL 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawnNP_001027071.1 Mito_carr 39..159 CDD:395101 23/108 (21%)
Mito_carr 178..265 CDD:395101
Mito_carr 268..371 CDD:395101
coltNP_477221.1 Mito_carr 12..107 CDD:395101
Mito_carr 112..202 CDD:395101
Mito_carr 210..299 CDD:395101
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.