DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawn and mtm1

DIOPT Version :10

Sequence 1:NP_001027071.1 Gene:Shawn / 3772641 FlyBaseID:FBgn0031039 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_595818.1 Gene:mtm1 / 2541312 PomBaseID:SPBP23A10.06 Length:335 Species:Schizosaccharomyces pombe


Alignment Length:387 Identity:119/387 - (30%)
Similarity:186/387 - (48%) Gaps:88/387 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 QFAAASAAMAAASSQNPSKATMTDPRFRIRPLQQVASACTGAMVTACFMTPLDVIKTRLQAQQ-- 71
            |..||:..:.|..|.|      .:|  .::|:.::.|||.|:::|...:|||||:|||||::.  
pombe     2 QIGAATEGVEADLSVN------AEP--DVKPIAKMLSACVGSVITTLTVTPLDVVKTRLQSESIS 58

  Fly    72 -----QALLSNKCFLYCNGLMDHICPCGPDTPNPAAAKPAPR-FSGTIDAFIKISRTEGIGSLWS 130
                 |.:.|.|..                    ...:|||: ..|.:....:|:|.||:.|||.
pombe    59 QYSSTQPISSAKIL--------------------GKGRPAPKPLGGPVSGLYQIARHEGVRSLWR 103

  Fly   131 GLSPTLISALPSTIIYFVAYEQFKARFTDIHYKYTRRPDTIAHDIPHPIPFLVPLLAGVSGRILA 195
            ||.|:|...||:..:.|:.|||....::|..:     |...|             :||.|.|.::
pombe   104 GLVPSLTMLLPANTVQFLGYEQLLPLYSDWGF-----PAAAA-------------IAGASARTIS 150

  Fly   196 VTCVSPVELIRTKMQS---------QRMTHAEMFGTIRQVVQSQGVLGLWRGLPPTILRDVPFSG 251
            .|.|||:||.||::|:         .|....|:|..::.::..:|:|.||.|:..|:.||||||.
pombe   151 ATIVSPIELFRTRVQAVGGHYPPGHAREIANEVFDGLKLMIHQKGILNLWSGVSVTLWRDVPFSA 215

  Fly   252 IYWTCYEYLK---------SSFGVVEPT--FSFSFAAGAISGSVAATITTPFDVVKTHEQIEFGE 305
            .||..||.::         .:|...:.|  ...:|.:|.|||::|..:|.||||.||.:|:. |.
pombe   216 FYWWSYERIRLFLLGHPSLQAFSSSQSTKDLYINFVSGGISGTLATLLTQPFDVSKTAKQVH-GH 279

  Fly   306 KFIFSDNPPKQVATKSVAMRLASIYRMGGVPAIFSGLGPRLFKVAPACAIMISSFEYGKSFF 367
                         |.:....:.::::.||..|::.|..||..||||:|||||||:...|.:|
pombe   280 -------------TLTRGQFMLTLWKRGGPKALWKGTLPRCVKVAPSCAIMISSYHLTKKYF 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawnNP_001027071.1 Mito_carr 39..159 CDD:395101 40/127 (31%)
Mito_carr 178..265 CDD:395101 32/104 (31%)
Mito_carr 268..371 CDD:395101 36/102 (35%)
mtm1NP_595818.1 Mito_carr 21..132 CDD:395101 40/130 (31%)
Mito_carr 148..231 CDD:395101 28/82 (34%)
Mito_carr 242..331 CDD:395101 36/101 (36%)

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