DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gr59f and lite-1

DIOPT Version :9

Sequence 1:NP_788432.1 Gene:Gr59f / 37726 FlyBaseID:FBgn0041234 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_509043.3 Gene:lite-1 / 180894 WormBaseID:WBGene00001803 Length:439 Species:Caenorhabditis elegans


Alignment Length:413 Identity:74/413 - (17%)
Similarity:146/413 - (35%) Gaps:116/413 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 LYRTLFW----LLLISVLANTAPITILPGCP----NRFY-----------RLVHLSWMILWYGLF 78
            |:|...|    |||.:.|.....:.:.|...    ..|:           .|:.||.::....|:
 Worm    71 LFRIYSWLVFCLLLFTTLRKFNQVGVRPNGTRENLQEFFANPRSMITLCNALIMLSGLLASLQLY 135

  Fly    79 VLGS--------YWEFVL-VTTQRVSLDRYLNAIESAIYVVHIFSIMLLTWQCRNW--------A 126
            .||:        ..:|.| |.|::....:::.....|::...:...|..|:....|        .
 Worm   136 TLGAKRLKPLKILCQFSLNVRTKQAERRQFMINTFLAVFSGLLALTMAATYAMSKWGYILYIVGT 200

  Fly   127 PKLMTNIVTSDLNRAYTIDCNRTKRFIRLQLFLVGIFACLAIFFNIWTHKFVVYRSILSINSYVM 191
            |.|.|..:...|..:|.:..:|            ...:.|||.|  :.|..|:.|||..:.:.::
 Worm   201 PNLDTETIFCVLLDSYALFVSR------------AAISALAILF--YQHCSVIRRSIKHLINEMV 251

  Fly   192 PNIISSISFAQYYLLLQGIAWRQRRLTEGLERELTHLHSPRISEVQKIRMHHANLIDFTKAVNRT 256
            |                            .|::...|....:.::...::.:..:.: .|||.. 
 Worm   252 P----------------------------AEQDECPLPESSLQKIHDCQISYQRIFN-GKAVIE- 286

  Fly   257 FQYSILLLFVGCFLNFNLVLFLVYQGIENPSMADFTKWVCMLLWLAMHVGKVCSILHFN------ 315
             :|...:||....:...:..||::.|:...|:. :::.|.:::|:   |..:..:|.|:      
 Worm   287 -EYYSFVLFYSYGVCIPIFCFLMFVGMSAQSIC-WSEVVSIVIWI---VNAILVLLLFSLPAFMI 346

  Fly   316 ---------QSIQNEHSTC-----LTLLSRVSYARKDIQDTITHFIIQMRTNVRQHVVCGVINLD 366
                     .|.:..|.|.     ||:||:           :|.|..|:.:.......|....:|
 Worm   347 NEDGDRLVASSFRMYHETFHEERDLTVLSQ-----------MTFFTFQIHSTKLTLSACNYFYMD 400

  Fly   367 LKFLTTLLVASADFFIFLLQYDV 389
            ...|.:|..|...:|:.|.::|:
 Worm   401 RSILLSLFSAILTYFLILWEFDI 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gr59fNP_788432.1 7tm_7 61..388 CDD:303125 65/374 (17%)
lite-1NP_509043.3 7tm_7 75..425 CDD:285581 72/409 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR21143
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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