DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SLIRP1 and hnrnpab

DIOPT Version :10

Sequence 1:NP_001027083.1 Gene:SLIRP1 / 3772560 FlyBaseID:FBgn0064117 Length:90 Species:Drosophila melanogaster
Sequence 2:XP_012814656.1 Gene:hnrnpab / 734098 XenbaseID:XB-GENE-6042555 Length:326 Species:Xenopus tropicalis


Alignment Length:75 Identity:24/75 - (32%)
Similarity:46/75 - (61%) Gaps:0/75 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKIENEQKHIL 80
            ::|||.|.|....::|:.||.:||.|....:..|..||.|:|:||:.|....:::|:..:::|.|
 Frog    66 KMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQKEHRL 130

  Fly    81 EGNYLNIQKS 90
            :|..::.:|:
 Frog   131 DGRLIDPKKA 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIRP1NP_001027083.1 RRM_SLIRP 16..88 CDD:409688 23/71 (32%)
hnrnpabXP_012814656.1 CBFNT 1..52 CDD:311868
RRM1_hnRNPAB 61..140 CDD:410151 23/73 (32%)
RRM2_hnRNPAB 145..224 CDD:409997
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.