DRSC/TRiP Functional Genomics Resources

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Protein Alignment SLIRP1 and rbm34

DIOPT Version :10

Sequence 1:NP_001027083.1 Gene:SLIRP1 / 3772560 FlyBaseID:FBgn0064117 Length:90 Species:Drosophila melanogaster
Sequence 2:NP_001004890.1 Gene:rbm34 / 448232 XenbaseID:XB-GENE-5895036 Length:412 Species:Xenopus tropicalis


Alignment Length:102 Identity:31/102 - (30%)
Similarity:53/102 - (51%) Gaps:22/102 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 AKVGKSVH-RI---------------FVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSK 56
            |:||...| |:               |:||||:.:..:.:|.:|.|.|:|....:|.|::||..|
 Frog   248 AEVGSGFHIRVDIASKRSSHDNKRSAFIGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGIGK 312

  Fly    57 GYGFVSFNSLTALE---KIENEQKHILEGNYLNIQKS 90
            |:|:|.|.|..|::   |:.|.:   |.|..:.:::|
 Frog   313 GFGYVLFESADAVQLALKLNNSE---LSGRKIRVKRS 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIRP1NP_001027083.1 RRM_SLIRP 16..88 CDD:409688 26/89 (29%)
rbm34NP_001004890.1 RRM1_RBM34 168..259 CDD:409828 5/10 (50%)
RRM2_RBM34 272..344 CDD:409829 25/74 (34%)

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