DRSC/TRiP Functional Genomics Resources

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Protein Alignment SLIRP1 and MSI1

DIOPT Version :10

Sequence 1:NP_001027083.1 Gene:SLIRP1 / 3772560 FlyBaseID:FBgn0064117 Length:90 Species:Drosophila melanogaster
Sequence 2:NP_002433.1 Gene:MSI1 / 4440 HGNCID:7330 Length:362 Species:Homo sapiens


Alignment Length:85 Identity:27/85 - (31%)
Similarity:46/85 - (54%) Gaps:0/85 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 AVAKVGKSVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALE 70
            |..|:.....:||||.|......::::.||.:||:|..|.::|||.|...:|:|||:|.|...:|
Human   100 AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164

  Fly    71 KIENEQKHILEGNYLNIQKS 90
            |:.....|.:....:..:|:
Human   165 KVCEIHFHEINNKMVECKKA 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIRP1NP_001027083.1 RRM_SLIRP 16..88 CDD:409688 24/71 (34%)
MSI1NP_002433.1 RRM1_MSI 21..96 CDD:409990
PABP-1234 <32..339 CDD:130689 27/85 (32%)
RRM2_MSI 110..183 CDD:240769 24/72 (33%)
Blue background indicates that the domain is not in the aligned region.

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