DRSC/TRiP Functional Genomics Resources

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Protein Alignment SLIRP1 and Hrb98DE

DIOPT Version :10

Sequence 1:NP_001027083.1 Gene:SLIRP1 / 3772560 FlyBaseID:FBgn0064117 Length:90 Species:Drosophila melanogaster
Sequence 2:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster


Alignment Length:80 Identity:27/80 - (33%)
Similarity:49/80 - (61%) Gaps:0/80 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 GKSVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKIENE 75
            |.:|.::|||.|......|.:|.||:.||.:|..|::.||.||..:|:.||.|:....::|:..:
  Fly   118 GATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182

  Fly    76 QKHILEGNYLNIQKS 90
            ::|.|.|..::::|:
  Fly   183 KQHQLNGKMVDVKKA 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIRP1NP_001027083.1 RRM_SLIRP 16..88 CDD:409688 24/71 (34%)
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:409992
RRM_SF 123..195 CDD:473069 24/71 (34%)
Blue background indicates that the domain is not in the aligned region.

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