DRSC/TRiP Functional Genomics Resources

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Protein Alignment SLIRP1 and Rb97D

DIOPT Version :10

Sequence 1:NP_001027083.1 Gene:SLIRP1 / 3772560 FlyBaseID:FBgn0064117 Length:90 Species:Drosophila melanogaster
Sequence 2:NP_524520.1 Gene:Rb97D / 43231 FlyBaseID:FBgn0004903 Length:471 Species:Drosophila melanogaster


Alignment Length:78 Identity:28/78 - (35%)
Similarity:49/78 - (62%) Gaps:0/78 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKIENEQK 77
            ||.::|||.|......:.||.||.:||.|||..::.||.||..:|:.||.|:...|::|...:::
  Fly   121 SVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQ 185

  Fly    78 HILEGNYLNIQKS 90
            |.::..:::::||
  Fly   186 HAIKYVHVDVKKS 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIRP1NP_001027083.1 RRM_SLIRP 16..88 CDD:409688 24/71 (34%)
Rb97DNP_524520.1 RRM2_hnRNPA_like 124..196 CDD:409766 24/71 (34%)
RRM_SF 33..110 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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