DRSC/TRiP Functional Genomics Resources

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Protein Alignment SLIRP1 and Dazap1

DIOPT Version :10

Sequence 1:NP_001027083.1 Gene:SLIRP1 / 3772560 FlyBaseID:FBgn0064117 Length:90 Species:Drosophila melanogaster
Sequence 2:XP_006241030.1 Gene:Dazap1 / 362836 RGDID:1305280 Length:406 Species:Rattus norvegicus


Alignment Length:83 Identity:27/83 - (32%)
Similarity:45/83 - (54%) Gaps:4/83 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 AAAVAKVGKSVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTA 68
            :|...::||    :|||.|.|:...:.||.||.::|.||...::.||.|..|:|:|||.|.....
  Rat     3 SAGADEIGK----LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63

  Fly    69 LEKIENEQKHILEGNYLN 86
            :..:...:.|.|:|..::
  Rat    64 VGTVLASRPHTLDGRNID 81

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIRP1NP_001027083.1 RRM_SLIRP 16..88 CDD:409688 24/71 (34%)
Dazap1XP_006241030.1 RRM1_DAZAP1 11..92 CDD:409988 25/75 (33%)
RRM2_DAZAP1 111..190 CDD:409765
Blue background indicates that the domain is not in the aligned region.

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