DRSC/TRiP Functional Genomics Resources

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Protein Alignment SLIRP1 and Hnrnpa1

DIOPT Version :10

Sequence 1:NP_001027083.1 Gene:SLIRP1 / 3772560 FlyBaseID:FBgn0064117 Length:90 Species:Drosophila melanogaster
Sequence 2:NP_001386203.1 Gene:Hnrnpa1 / 29578 RGDID:69234 Length:373 Species:Rattus norvegicus


Alignment Length:78 Identity:21/78 - (26%)
Similarity:46/78 - (58%) Gaps:0/78 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKIENEQK 77
            :|.:||||.:........||.||.::|::....::.|:.:|..:|:.||:|:...:::||..::.
  Rat   103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 167

  Fly    78 HILEGNYLNIQKS 90
            |.:.|:...::|:
  Rat   168 HTVNGHNCEVRKA 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIRP1NP_001027083.1 RRM_SLIRP 16..88 CDD:409688 19/71 (27%)
Hnrnpa1NP_001386203.1 RRM1_hnRNPA1 12..92 CDD:410154
RRM2_hnRNPA3 105..184 CDD:409996 20/76 (26%)
HnRNPA1 313..345 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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