DRSC/TRiP Functional Genomics Resources

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Protein Alignment SLIRP1 and CSTF2

DIOPT Version :10

Sequence 1:NP_001027083.1 Gene:SLIRP1 / 3772560 FlyBaseID:FBgn0064117 Length:90 Species:Drosophila melanogaster
Sequence 2:NP_001293135.1 Gene:CSTF2 / 1478 HGNCID:2484 Length:597 Species:Homo sapiens


Alignment Length:82 Identity:28/82 - (34%)
Similarity:45/82 - (54%) Gaps:1/82 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VGKSVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSF-NSLTALEKIE 73
            |.:|:..:||||:|:....::|:..|.|.|.|||..:::|:.||..|||||..: :..|||..:.
Human    11 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

  Fly    74 NEQKHILEGNYLNIQKS 90
            |.......|..|.:..:
Human    76 NLNGREFSGRALRVDNA 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIRP1NP_001027083.1 RRM_SLIRP 16..88 CDD:409688 26/72 (36%)
CSTF2NP_001293135.1 PABP-1234 4..352 CDD:130689 28/82 (34%)
RRM_CSTF2_CSTF2T 10..94 CDD:410072 28/82 (34%)
CSTF2_hinge 112..191 CDD:433869
PHA03378 <253..455 CDD:223065
CSTF_C 553..593 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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