DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Adhr and rdh1

DIOPT Version :9

Sequence 1:NP_001027272.1 Gene:Adhr / 3772432 FlyBaseID:FBgn0000056 Length:272 Species:Drosophila melanogaster
Sequence 2:NP_932335.1 Gene:rdh1 / 378440 ZFINID:ZDB-GENE-030912-15 Length:327 Species:Danio rerio


Alignment Length:139 Identity:36/139 - (25%)
Similarity:62/139 - (44%) Gaps:34/139 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 MDYIDVLINGATLCDENNIDATINTNLTGMMNTVATVLPYMDRKMGGTGGLIVNVTSVIGLDPSP 147
            ||::.:          ::....::.||||::......||.:.:..    |.:|||.|::| ..|.
Zfish   132 MDWMQL----------HDFKKVLDVNLTGVIAVTLKFLPLLKKAQ----GRVVNVASMLG-RLSI 181

  Fly   148 VFCAYSASKFGVIGFTRSL-ADPLYYSQNGVAVMAVCCG--PTRV----FVDRELK--------- 196
            :...|..|||||..|:.|| .|.:::   ||.|..:..|  .|:|    .::.:||         
Zfish   182 IGGGYCLSKFGVEAFSDSLRRDMVHF---GVKVSIIEPGFFKTQVTDLGLIEDDLKKRWSNLPEQ 243

  Fly   197 AFLEYGQSF 205
            ...:||.|:
Zfish   244 VRRDYGDSY 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AdhrNP_001027272.1 ADH_SDR_c_like 7..248 CDD:187584 36/139 (26%)
adh_short 7..195 CDD:278532 31/118 (26%)
rdh1NP_932335.1 NADB_Rossmann 40..316 CDD:304358 36/139 (26%)
adh_short 40..224 CDD:278532 30/109 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR43313
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.