DRSC/TRiP Functional Genomics Resources

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Protein Alignment bw and Abcg1

DIOPT Version :9

Sequence 1:NP_001286769.1 Gene:bw / 37724 FlyBaseID:FBgn0000241 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_445954.2 Gene:Abcg1 / 85264 RGDID:620294 Length:666 Species:Rattus norvegicus


Alignment Length:697 Identity:173/697 - (24%)
Similarity:302/697 - (43%) Gaps:156/697 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LEWKQLNYYVPDQEQSNYSFWNECRKKRELRILQDASGHMKTGDLIAILGGSGAGKTTLLAAISQ 81
            :|:|.|:|.||:.     .:|   |||....:|:..||...:|:|:||:|.|||||:||:..::.
  Rat    77 IEFKDLSYSVPEG-----PWW---RKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG 133

  Fly    82 RLRGNLTGDVVLNGMAMERHQMTRISSFLPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAEKRQR 146
            .....:.|.|::|||..:.....::|.::.|.::.:...|..|.:...:|.|:..:  ...:|:.
  Rat   134 YRETGMKGAVLINGMPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEK--DEGRREM 196

  Fly   147 VADLLLAVGLRDAAHTRIQQLSGGERKRLSLAEELITDPIFLFCDEPTTGLDSFSAYSVIKTLRH 211
            |.::|.|:||...|:||...||||:||||::|.||:.:|..:|.||||:||||.|.:.|:..::.
  Rat   197 VKEILTALGLLPCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKG 261

  Fly   212 LCTRRRIAKHSLNQVYGEDSFETPSGESSASGSGSKSIEMEVVAESHESLLQTMRELPALGVLSN 276
            |                              ..|.:||                           
  Rat   262 L------------------------------AQGGRSI--------------------------- 269

  Fly   277 SPNGTHKKAAICSIHQPTSDIFELFTHIILMDGGRIVYQGRTEQAAKFFTDLGYELPLNCNPADF 341
                      :|:||||::.:||||..:.::..|:.||:|:......:..|||...|...|||||
  Rat   270 ----------VCTIHQPSAKLFELFDQLYVLSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPADF 324

  Fly   342 YLKTLADKEGKENAGAVLRAKYEHETDGLYSGSWLLARSYSGD-----YLKH------------V 389
            .::..:.:.|.:|: .::||..|...|..|.      |...||     :|.|            .
  Rat   325 VMEVASGEYGDQNS-RLVRAVREGMCDSDYK------RELGGDGDVNPFLWHRPAEEDSASMEGC 382

  Fly   390 QNFKKIRWIYQVYLLMVRFMTEDLR-----------NIRSGLIAFGFFMITAVTLSLMYSGIGGL 443
            .:| ....:.|..:|..|.....:|           :|..||:           :.|:|.|||..
  Rat   383 HSF-SASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLL-----------IGLLYLGIGNE 435

  Fly   444 TQRTVQDVGGSIFMLSNEMIFTFSYGVTYIFPAALPIIRREVGEGTYSLSAYYVALVLSFVPVAF 508
            .::.:.: .|.:|.....::|.........||..:.:..||.....|||.|||:|..::.||.  
  Rat   436 AKKVLSN-SGFLFFSMLFLMFAALMPTVLTFPLEMSVFLREHLNYWYSLKAYYLAKTMADVPF-- 497

  Fly   509 FKGYVFLSVIYASIYY--------TRGFLLYLSMGFLMSLSAVAAVGYGVFLSSLFESDKMASEC 565
               .:...|.|.||.|        ...|:|:.::|.:.||   .|...|:.:.:...|.::|:..
  Rat   498 ---QIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSL---VAQSLGLLIGAASTSLQVATFV 556

  Fly   566 AAPFDLIFLIFGGTYMNVDTVP----GLKYLSLFFYSNEALMYKFW-IDIDNIDCPVNEDHPC-I 624
            .....:..|:|.|.:::.||:|    .:.|:|...|..|.::...: :|.:::.|.:.|  .| .
  Rat   557 GPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLDREDLHCDIAE--TCHF 619

  Fly   625 KTGVEVLQQGSYRNADYTYWLDCFSLVVVAVIFHIVSFGLVRRYIHR 671
            :....:|::....||  ..:||   .:|:.:.|  :|..|:..::.|
  Rat   620 QKSEAILRELDVENA--KLYLD---FIVLGIFF--ISLRLIAYFVLR 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bwNP_001286769.1 P-loop_NTPase 31..316 CDD:304359 78/284 (27%)
3a01204 40..673 CDD:273361 166/674 (25%)
ABC2_membrane 404..604 CDD:279410 51/222 (23%)
Abcg1NP_445954.2 3a01204 60..666 CDD:273361 173/697 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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