DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bw and ABCG28

DIOPT Version :9

Sequence 1:NP_001286769.1 Gene:bw / 37724 FlyBaseID:FBgn0000241 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_200882.4 Gene:ABCG28 / 836195 AraportID:AT5G60740 Length:1109 Species:Arabidopsis thaliana


Alignment Length:662 Identity:150/662 - (22%)
Similarity:251/662 - (37%) Gaps:201/662 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 KKRELRILQDASGHMKTGDLIAILGGSGAGKTTLLAAISQRLRG-NLTGDVVLNGMAMERHQMTR 105
            |.:...:::..:|.:..|.:.|::|.|||||||.|.|::.:..| .:||.:::||.........:
plant   509 KGKNKHLMRCVTGKLSPGRVSAVMGPSGAGKTTFLTALTGKAPGCIMTGMILVNGKVESIQSYKK 573

  Fly   106 ISSFLPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAEKRQRVADLLLAVGL---RDAAHTRIQQ- 166
            |..|:||.:|.....|..|:|:|.:..::.....|.||...|..::.::||   ||:....::: 
plant   574 IIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKPEKVLVVERVIESLGLQHVRDSLVGTVEKR 638

  Fly   167 -LSGGERKRLSLAEELITDPIFLFCDEPTTGLDSFSAYSVIKTLRHLCTRRRIAKHSLNQVYGED 230
             :|||:|||:::..|::.:|..|..||||:||||.|:..:::.|      ||.|...:|      
plant   639 GISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRAL------RREALEGVN------ 691

  Fly   231 SFETPSGESSASGSGSKSIEMEVVAESHESLLQTMRELPALGVLSNSPNGTHKKAAICS-IHQPT 294
                                                                    ||. :|||:
plant   692 --------------------------------------------------------ICMVVHQPS 700

  Fly   295 SDIFELFTHIILM-DGGRIVYQGRTEQAAKFFTDLGYELPLNCNPADFYLKTLADKEG------- 351
            ..:|.:|..:||: .||.|.|||..::..::|:.||..:|...||.|:|:..|   ||       
plant   701 YTLFRMFDDLILLAKGGLICYQGPVKKVEEYFSSLGIVVPERVNPPDYYIDIL---EGILKPSTS 762

  Fly   352 -------------------------KENAGAVLRAKYEHETDGLYSGSWLL---ARSYSGDYLKH 388
                                     |...|....|..|:...|..:...::   ..|::|::.:.
plant   763 SGVTYKQLPVRWMLHNGYPVPMDMLKSIEGMASSASGENSAHGGSAHGSVVGDDGTSFAGEFWQD 827

  Fly   389 VQ------------NF--------KKIRWIYQVY-LLMVRFMTEDLRNIRSGLIAFGFFMITAVT 432
            |:            ||        :::..:||.| ..:.|...:.||..|:..:.:...::..:.
plant   828 VKANVEIKKDNLQNNFSSSGDLSEREVPGVYQQYRYFLGRLGKQRLREARTLAVDYLILLLAGIC 892

  Fly   433 LSLMYSGIGGLTQRTVQDVGGSIFMLSNEMIFTFSYGVTYIFPAALPIIR-------------RE 484
            |                   |::..:|:|......|..|.|..:.|..|.             ||
plant   893 L-------------------GTLAKVSDETFGAMGYTYTVIAVSLLCKITALRSFSLDKLHYWRE 938

  Fly   485 VGEGTYSLSAYYVA--LVLSFVPVAFFKGYVFLSVIY---------ASIYYTRGFLLYLSMGFLM 538
            ...|..|| ||::|  .|..|..:.  |..|:||:.|         ...|.....|:|...|...
plant   939 SRAGMSSL-AYFLAKDTVDHFNTIV--KPLVYLSMFYFFNNPRSTVTDNYVVLICLVYCVTGIAY 1000

  Fly   539 SLSAVAAVGYGVFLSSLFESDKMASECAAPFDLIFLIFGGTYMN--VDTVPGLKY----LSLFFY 597
            :|:.:...|.....|.|...            ::.||...|..|  ||::..|.|    |..|..
plant  1001 TLAILFEPGPAQLWSVLLPV------------VLTLIATSTNDNKIVDSISELCYTRWALEAFVV 1053

  Fly   598 SNEALMYK-FWI 608
            || |..|| .|:
plant  1054 SN-AQRYKGVWL 1064

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bwNP_001286769.1 P-loop_NTPase 31..316 CDD:304359 72/281 (26%)
3a01204 40..673 CDD:273361 150/662 (23%)
ABC2_membrane 404..604 CDD:279410 49/229 (21%)
ABCG28NP_200882.4 ABCG_EPDR 496..723 CDD:213180 72/281 (26%)
3a01204 513..1103 CDD:273361 149/658 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.870

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