DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bw and ABCG4

DIOPT Version :9

Sequence 1:NP_001286769.1 Gene:bw / 37724 FlyBaseID:FBgn0000241 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_194305.1 Gene:ABCG4 / 828680 AraportID:AT4G25750 Length:577 Species:Arabidopsis thaliana


Alignment Length:653 Identity:158/653 - (24%)
Similarity:273/653 - (41%) Gaps:155/653 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 ILQDASGHMKTGDLIAILGGSGAGKTTLLAAISQRLRGNLTGDVVLNGMAMERHQMTRISSFLPQ 112
            ||::.:.......::||:|.|||||:|||..::.| ....:|.::||.:.:......:|||::||
plant    30 ILRNITLTSHPSQILAIIGPSGAGKSTLLDILAAR-TSPTSGSILLNSVLINPSSYRKISSYVPQ 93

  Fly   113 FEINVKTFTAYEHLYFMSHFKMHRRTTKAEKRQRVADLLLAVGLRDAAHTRI-QQLSGGERKRLS 176
            .:......|..|...|.:...:.:..:|..  ..||.||..:.|...||||: |.||||||:|:|
plant    94 HDTFFPLLTVSETFTFSASLLLPKNLSKVS--SVVASLLKELNLTHLAHTRLGQGLSGGERRRVS 156

  Fly   177 LAEELITDPIFLFCDEPTTGLDSFSAYSVIKTLRHLCTRRRIAKHSLNQVYGEDSFETPSGESSA 241
            :...|:.||..|..||||:||||.||:.|::.|:.:.|.|                         
plant   157 IGLSLLHDPEVLLLDEPTSGLDSKSAFDVVQILKSIATSR------------------------- 196

  Fly   242 SGSGSKSIEMEVVAESHESLLQTMRELPALGVLSNSPNGTHKKAAICSIHQPTSDIFELFTHIIL 306
                                                     ::..|.|||||:..|..|...::|
plant   197 -----------------------------------------ERIVILSIHQPSFKILSLIDRVLL 220

  Fly   307 MDGGRIVYQGRTEQAAKFFTDLGYELPLNCNPADFYLKTLAD-KEGKENAGAVL-----RAKYEH 365
            :..|.|||.||.:....|....|:.:|...|..::.::.|.: ::..|||...|     .:|.::
plant   221 LSKGTIVYHGRLDLLEAFLLSKGFTVPSQLNSLEYAMEILQNIRDPYENANIALPDHCPESKKQN 285

  Fly   366 ETDGLYSGSWLLARSYSGDYLKHVQNFKKIRW--IYQVYLLMVRFMTEDLRNIRSGLIAFGFFMI 428
            :...:.        .|....:..:.......|  ||:...|::..:.|.|              :
plant   286 QKQSIV--------RYKSSRITEISLLSSRFWKIIYRTRQLLLTNILESL--------------V 328

  Fly   429 TAVTLSLMYSGIG----GLTQRTVQDVGGSIFMLSNEMIFTFSYGVTYIFPAALPIIRREVGEGT 489
            ..:.|..:|..||    |:.:|.      .:|..:...:.:.:.....||....||:.||...|.
plant   329 VGLVLGTIYLNIGTGKEGIRKRF------GLFAFTLTFLLSSTTQTLPIFIDERPILLRETSSGL 387

  Fly   490 YSLSAYYVALVLSFVPVAFFKGYVFL-SVIYA-SIYYTRG----------FLLYLSMGFLMSLSA 542
            |.||::.:|..|.|:|      |:.| ::||: |:|:..|          |:|.:.:..||:.|.
plant   388 YRLSSHILANTLVFLP------YLLLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSF 446

  Fly   543 VAAVGYGVFLSSLFESDKMASECAAPFDLIFLIFGGTYMNVDTVPGLKY-LSLFFYSNEALMYKF 606
            |      :|||||..:....:.........|.:|.|.:::.:::|  || |.::|:|    |||:
plant   447 V------LFLSSLAPNYIAGTSSVTILLAAFFLFSGYFISKESLP--KYWLFMYFFS----MYKY 499

  Fly   607 WID---IDNIDCPVNE---------DHPCIKTGVEVLQQGSYRNADYTYWLDCFSLVVVAVIFHI 659
            .:|   |:...|..|:         .:.|:.||.:||.:....  :...|.:.:.|:...|::.:
plant   500 ALDALLINEYSCLHNKCLVWFEEASVNSCLVTGGDVLDKNGLH--ERQRWFNVYMLLGFFVLYRV 562

  Fly   660 VSF 662
            :.|
plant   563 LCF 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bwNP_001286769.1 P-loop_NTPase 31..316 CDD:304359 75/268 (28%)
3a01204 40..673 CDD:273361 158/653 (24%)
ABC2_membrane 404..604 CDD:279410 51/216 (24%)
ABCG4NP_194305.1 3a01204 30..572 CDD:273361 158/653 (24%)
P-loop_NTPase 30..230 CDD:304359 75/268 (28%)
ABC2_membrane 304..507 CDD:279410 58/240 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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