DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bw and Abcg3l4

DIOPT Version :9

Sequence 1:NP_001286769.1 Gene:bw / 37724 FlyBaseID:FBgn0000241 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_001032282.1 Gene:Abcg3l4 / 360997 RGDID:1588538 Length:652 Species:Rattus norvegicus


Alignment Length:721 Identity:162/721 - (22%)
Similarity:274/721 - (38%) Gaps:195/721 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 GPSLCLEWKQLNYYVPDQEQSNYSFWNECRKKRELRILQDASGHMKTGDLIAILGGSGAGKTTLL 76
            |.::.|.:..::|.  :..||.:..   |:|.|.:..|...||.|..| |.||:|.....::.||
  Rat    33 GEAVVLSFHNISYI--ETVQSGFPL---CQKTRVMERLSSISGIMGPG-LNAIMGPQDGSRSLLL 91

  Fly    77 AAISQRLR-GNLTGDVVLNGMAMERHQMTRISSFLPQFEINVKTFTAYEHLYFMSHFKMHRRTTK 140
            ..::.|.. ..|:||:::||.....: ....|.::|..::.:.|.|..::|.|.:...:....|:
  Rat    92 DVLAARRHPSGLSGDILVNGKPRPAN-FKCTSGYVPHNDVVMHTVTVRDNLEFSAALCLPMTITR 155

  Fly   141 AEKRQRVADLLLAVGLRDAAHT--RIQQLSGGERKRLSLAEELITDPIFLFCDEPTTGLDSFSAY 203
            .|||:|:.::|..:.|.:..:|  |.::|    |||.|:|.|||.|...||.|.|||.||..:..
  Rat   156 DEKRRRINEVLELLHLDEKQNTKPRSKEL----RKRTSIAVELIADHPILFLDNPTTYLDFTTTT 216

  Fly   204 SVIKTLRHLCTRRRIAKHSLNQVYGEDSFETPSGESSASGSGSKSIEMEVVAESHESLLQTMREL 268
            .||..||.:                           |..|                         
  Rat   217 YVISVLRRM---------------------------SMKG------------------------- 229

  Fly   269 PALGVLSNSPNGTHKKAAICSIHQPTSDIFELFTHIILMDGGRIVYQGRTEQAAKFFTDLGYELP 333
                           |..|.||:||...||..|..:.||..|::::.|....|.::||..||   
  Rat   230 ---------------KTIIFSINQPQYSIFRFFDSLTLMASGKLMFHGPARDALEYFTSAGY--- 276

  Fly   334 LNCNPADFYLKTL------ADKEGKENAGAVLRAKYEHETDGLYSGSWLLARSYSGDYLKHVQNF 392
                ||||:|..:      .:::|.|      ...||...:..|..:..|...|:...| |....
  Rat   277 ----PADFFLDIINGGFCDTEEDGHE------VGNYEELFERQYQATKKLVNMYAQSRL-HSDTR 330

  Fly   393 KKIRWI---------------------YQVYLLMVRFMTEDLRNIRSGLIAFGF---FMITAVTL 433
            .::..|                     :|:..:..|    ..:||      :||   .:|.||.:
  Rat   331 ARLDQILGQQQLDRNSAVETTCATPFWHQLMWITYR----SFKNI------WGFPWATVIQAVII 385

  Fly   434 SLMYSGIGGLTQRTVQDV------GGSIFMLSNEMIFTFSYGVTYIFPAALPIIRR-----EVGE 487
            :::.:.||...|....|.      .|.:::|      |....:|.:|...|.:|.|     |...
  Rat   386 AILAALIGIAFQVLKNDCNEVRIRAGLLYLL------TIFQSLTSVFAGVLFVINRHRFLHEHTS 444

  Fly   488 GTYSLSAYYVA-LVLSFVPVAFFKGYVFLSVIYASIYYTRGFLLYLSMGFLMSLSAVAAVGYGVF 551
            |.|.:|.|:.. |:...:|.......:.|             :.|...|..||:|:..|:.:.|.
  Rat   445 GYYRVSCYFFGKLLADLIPRRLLPSTIVL-------------ITYFIAGGRMSMSSFFAMLFTVM 496

  Fly   552 L-----SSL---FESDKMASECAAPFDLIF----LIFGGTYMNVDTVP----GLKYLSLFFYSNE 600
            :     |||   ..:.|.|......|..|:    |||.|..:...::|    .::|.|:..|:.:
  Rat   497 MLDFSVSSLPLSIGAGKNAVAVPTLFVTIYFVFMLIFSGLSLYSGSLPPKLSWIQYFSILHYAFK 561

  Fly   601 ALMYKFWIDIDNIDCPVNEDH-----PC----IKTGVEVLQQGSYRNADYTYWLDCFSLVVVAVI 656
            ||::..::. .|. |  :||.     .|    |..|.|.|.......:.:.:|.:..:|..:.:|
  Rat   562 ALLHNEFLG-QNF-C--SEDRMEELSRCHNYVICAGEEFLAIQGIDLSSWGFWENHLALACIMII 622

  Fly   657 FHIVSF 662
            ...:::
  Rat   623 LLTITY 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bwNP_001286769.1 P-loop_NTPase 31..316 CDD:304359 73/287 (25%)
3a01204 40..673 CDD:273361 157/693 (23%)
ABC2_membrane 404..604 CDD:279410 52/230 (23%)
Abcg3l4NP_001032282.1 3a01204 54..632 CDD:273361 157/698 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D209530at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.