DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bw and Abcg8

DIOPT Version :9

Sequence 1:NP_001286769.1 Gene:bw / 37724 FlyBaseID:FBgn0000241 Length:675 Species:Drosophila melanogaster
Sequence 2:NP_569098.2 Gene:Abcg8 / 155192 RGDID:620300 Length:672 Species:Rattus norvegicus


Alignment Length:648 Identity:145/648 - (22%)
Similarity:256/648 - (39%) Gaps:180/648 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 GPSLCLEWKQLNYYV-----------------PDQEQSNYSFWNECRKKRELRILQDASGHMKTG 59
            |.|..||.:.|.|.|                 |.:.:.:...|       :|.| ::.|..:::|
  Rat    42 GQSNTLEVRDLTYQVDMASQVPWFEQLAQFKLPWRSRGSQDSW-------DLGI-RNLSFKVRSG 98

  Fly    60 DLIAILGGSGAGKTTLLAAISQRLRGN--LTGDVVLNGMAMERHQMTRISSFLPQFEINVKTFTA 122
            .::||:|.:|.|:.|||..|:.|..|.  .:|.:.:||.......:.:..:.:.|.:..:...|.
  Rat    99 QMLAIIGSAGCGRATLLDVITGRDHGGKMKSGQIWINGQPSTPQLIQKCVAHVRQQDQLLPNLTV 163

  Fly   123 YEHLYFMSHFKMHRRTTKAEKRQRVADLLLAVGLRDAAHTR-----IQQLSGGERKRLSLAEELI 182
            .|.|.|::..::.:..::|::.:||.|::..:.||..|:||     ::.:|||||:|:|:..:|:
  Rat   164 RETLTFIAQMRLPKTFSQAQRDKRVEDVIAELRLRQCANTRVGNTYVRGVSGGERRRVSIGVQLL 228

  Fly   183 TDPIFLFCDEPTTGLDSFSAYSVIKTLRHLCTRRRIAKHSLNQVYGEDSFETPSGESSASGSGSK 247
            .:|..|..||||:|||||:|:::::||..|....|:                             
  Rat   229 WNPGILILDEPTSGLDSFTAHNLVRTLSRLAKGNRL----------------------------- 264

  Fly   248 SIEMEVVAESHESLLQTMRELPALGVLSNSPNGTHKKAAICSIHQPTSDIFELFTHIILMDGGRI 312
                                                  .:.|:|||.||||.||..::||..|..
  Rat   265 --------------------------------------VLISLHQPRSDIFRLFDLVLLMTSGTP 291

  Fly   313 VYQGRTEQAAKFFTDLGYELPLNCNPADFYLK-TLADKEGKENAGAVLRAKYEHETDGLYSGSWL 376
            :|.|..:...::||.:||..|...||||||:. |..|:..||...|.:..               
  Rat   292 IYLGVAQHMVQYFTSIGYPCPRYSNPADFYVDLTSIDRRSKEQEVATMEK--------------- 341

  Fly   377 LARSYSGDYLKHVQNFKKIRW---------------------------------IYQVYLLMVRF 408
             ||..:..:|:.||.|....|                                 |.|...|:.|.
  Rat   342 -ARLLAALFLEKVQGFDDFLWKAEAKSLDTGTYAVSQTLTQDTNCGTAAELPGMIQQFTTLIRRQ 405

  Fly   409 MTEDLRNIRSGLIAFGFFMITAVTLSLMYSGIGGLTQRTVQDVGGSIFMLSNEMIFTFSYGVTYI 473
            ::.|.|::.:..|......:.::.:..:|.|... ...:..|:...:||:...:.|.....|...
  Rat   406 ISNDFRDLPTLFIHGAEACLMSLIIGFLYYGHAD-KPLSFMDMAALLFMIGALIPFNVILDVVSK 469

  Fly   474 FPAALPIIRREVGEGTYSLSAYYVALVLSFVPVAFFKGYVFLSVIYA-SIYYTRG-------FLL 530
            ..:...::..|:.:|.|:...|:.|.||..:|.  ...||   :||. .||:...       |||
  Rat   470 CHSERSLLYYELEDGLYTAGPYFFAKVLGELPE--HCAYV---IIYGMPIYWLTNLRPGPELFLL 529

  Fly   531 YLSMGFL-------MSLSAVAAVGYGVFLSSLFESDKMASECAAPFDLIFLIFGGTYMNVDTV 586
            :..:.:|       |:|:|          |::..:..|:|.|.......|.:..|..:|::.:
  Rat   530 HFMLLWLVVFCCRTMALAA----------SAMLPTFHMSSFCCNALYNSFYLTAGFMINLNNL 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bwNP_001286769.1 P-loop_NTPase 31..316 CDD:304359 71/291 (24%)
3a01204 40..673 CDD:273361 136/603 (23%)
ABC2_membrane 404..604 CDD:279410 40/198 (20%)
Abcg8NP_569098.2 ABCG_White 60..295 CDD:213201 72/309 (23%)
3a01204 88..662 CDD:273361 135/595 (23%)
ABC2_membrane 401..605 CDD:279410 40/198 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.