DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bw and abcg4

DIOPT Version :9

Sequence 1:NP_001286769.1 Gene:bw / 37724 FlyBaseID:FBgn0000241 Length:675 Species:Drosophila melanogaster
Sequence 2:XP_004916110.1 Gene:abcg4 / 101734071 XenbaseID:XB-GENE-22063023 Length:639 Species:Xenopus tropicalis


Alignment Length:646 Identity:161/646 - (24%)
Similarity:272/646 - (42%) Gaps:130/646 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LEWKQLNYYVPDQEQSNYSFWNECRKKRELR-ILQDASGHMKTGDLIAILGGSGAGKTTLLAAIS 80
            :|:|.|:|.|.:         ..|.:||..: :|:..||...:.:||.|:|.|||||:||:..::
 Frog    57 IEFKDLSYSVRE---------GPCWRKRGYKTLLKCLSGMFCSRELIGIMGPSGAGKSTLMNILA 112

  Fly    81 QRLRGNLTGDVVLNGMAMERHQMTRISSFLPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAE-KR 144
            ......:||.:::||...|.....::|.::.|.::.:...|..|.:...::.|::.   |.| |:
 Frog   113 GYRESGMTGQILVNGKQRELRTFRKMSCYIMQDDMLLPHLTVKEAMMVSTNLKLNE---KMEVKK 174

  Fly   145 QRVADLLLAVGLRDAAHTRIQQLSGGERKRLSLAEELITDPIFLFCDEPTTGLDSFSAYSVIKTL 209
            :.|.::|.|:||.|.:.||...||||:||||::|.||:.:|..:|.||||:||||.|.:.|:..|
 Frog   175 KLVNEILTALGLLDCSGTRTLFLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLL 239

  Fly   210 RHLCTRRRIAKHSLNQVYGEDSFETPSGESSASGSGSKSIEMEVVAESHESLLQTMRELPALGVL 274
            ..|                              ..|.::|                         
 Frog   240 NSL------------------------------AQGGRTI------------------------- 249

  Fly   275 SNSPNGTHKKAAICSIHQPTSDIFELFTHIILMDGGRIVYQGRTEQAAKFFTDLGYELPLNCNPA 339
                        ||:||||::.:||:|..:.::..|:.:|:|.......:...||...|...|||
 Frog   250 ------------ICTIHQPSAKLFEMFNKLYILSQGQCIYRGSVTHLIPYLKGLGLHCPTYHNPA 302

  Fly   340 DFYLKTLADKEGKENAGAVLRAKYEHETDGLYSGSWLLARSYS-----------GDYLKHVQNFK 393
            ||.::..:.:.|..|. .:.||    ..|||..    :.|..|           .|...||::..
 Frog   303 DFIIELASGEYGDLNP-LLFRA----VEDGLCP----ITRDKSQQTKLDQEHCPNDVSVHVESHT 358

  Fly   394 -KIRWIYQVYLLMVRFMTEDLRNIRSGLIAFGFFMITAVTLSLMYSGIGGLTQRTVQDVGGSIF- 456
             ....:.|..:|..|.....||:.....:.|...:...|.:.|:|..||....:...:.|...| 
 Frog   359 FATSSLNQFCILFKRTFLSILRDTVLTHLRFMSHLCIGVLIGLLYLHIGDDASKVFNNTGFLFFS 423

  Fly   457 MLSNEMIFTFSYGVTYIFPAALPIIRREVGEGTYSLSAYYVALVLSFVPVAFFKGYVFLSVIYAS 521
            ||.  ::|.........||..:.:..||.....|||.|||:|..::.||.     .:...|.|.|
 Frog   424 MLF--LMFAALMPTVLTFPLEMSVFLREHLNYWYSLKAYYLAKTMADVPF-----QIVCPVAYCS 481

  Fly   522 IYY--------TRGFLLYLSMGFLMSLSAVAAVGYGVFLSSLFESDKMASECAAPFDLIFLIFGG 578
            |.|        ...|||:.:   |.:.:|:.|...|:.:.....|.::|:.......:..|:|.|
 Frog   482 IVYWMTSQPPEVSRFLLFSA---LATSTALVAQSLGLLIGVASNSLQVATFVGPVTAIPVLLFSG 543

  Fly   579 TYMNVDTVP----GLKYLSLFFYSNEALMYKFW-IDIDNIDCPVNEDHPC-IKTGVEVLQQ 633
            .:::..|:|    ...|:|...|..|.::...: :|...:.|   .:.|| .:...:|||:
 Frog   544 FFVSFKTIPTYLQWCSYISYVRYGFEGVILAIYGMDRAPLQC---RELPCTFQLPQQVLQE 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bwNP_001286769.1 P-loop_NTPase 31..316 CDD:304359 76/286 (27%)
3a01204 40..673 CDD:273361 156/623 (25%)
ABC2_membrane 404..604 CDD:279410 51/212 (24%)
abcg4XP_004916110.1 3a01204 40..639 CDD:273361 161/646 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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