DRSC/TRiP Functional Genomics Resources

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Protein Alignment seq and Kdm4c

DIOPT Version :9

Sequence 1:NP_001027415.1 Gene:seq / 3772396 FlyBaseID:FBgn0028991 Length:882 Species:Drosophila melanogaster
Sequence 2:NP_001165566.1 Gene:Kdm4c / 76804 MGIID:1924054 Length:1071 Species:Mus musculus


Alignment Length:422 Identity:74/422 - (17%)
Similarity:133/422 - (31%) Gaps:117/422 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   385 SVRGLDIARYEHIIDGVAYCLVCAKNDIFKTFKNKY--SFQRHAYLFHEGQNRKIF--------- 438
            :||.:|..:       ||....| :||:.|...:.:  .||...|...: |.:.|:         
Mouse   312 TVRWIDYGK-------VAKLCTC-RNDMVKISMDIFVKKFQPDRYQIWK-QGKDIYTIDHTKPTP 367

  Fly   439 -ACPICNKEFSRPDKMKMHKKDKHGDVPM---------------------PPSATTTPLKADGPP 481
             :.|.......|..|::...|...|:.|:                     .|:.....||....|
Mouse   368 ESTPEVKTWLQRKKKLRKPPKSLQGNKPLCKRPKPEEDEEFAEFSGEEGANPAMGPRHLKVTEKP 432

  Fly   482 AKRARTARTPRVRKTKDGSTPTKKRL---AQID-SVLDDVQ-------------------NGESL 523
            .|..      ::.|.::.|  .|:.|   .|:| |:|:|.:                   |..|.
Mouse   433 EKAL------KLGKLEESS--AKEALDTRIQVDQSLLNDTKLSGKGCISSSVTAEIPPEDNRASA 489

  Fly   524 TMAP---------VSVSHSQQQQQQQIQHSITTLAPSTPSQPQHQLQTLPSLDFSGMILPGGAQL 579
            .::|         :.:||..|..::  .|.:..|...:|..|    ..||.   |..:|..|.:.
Mouse   490 VISPSQLKEGADCIPLSHGHQAGKE--SHLLKILKLESPKIP----SPLPE---SNKVLTEGEEN 545

  Fly   580 ALANPGATSSVG--------LQRGPATPNGQPAPPTTTLIYSNQLELQQALLQQQLQGQSIMIQD 636
            .....|:....|        .:.|...|......|.||..:.:.|....|.....|..|.:...:
Mouse   546 DEEGHGSNLEPGEIPEALSEERNGLNIPKIIEGQPKTTKSWRHPLGKPPARSPMTLVKQQVASDE 610

  Fly   637 QAGNLVPLQLDGTQAIYTTAPQAQRQQT-TATYQTTQQQQQQPAQQPAGQA---QQQPHYELDNV 697
            :...::.:..:..:......|.....|| :..:...|:.....|:.....|   ...|:|:    
Mouse   611 ELPEVLSIDEEVEETESWAKPLIHLWQTKSPNFMAEQEYNATVAKMEPNCAICTLLMPYYK---- 671

  Fly   698 TYLSSTAAATPTSAEQQQQQQQQQHVIGTVQS 729
                      |.|::::...:.:..|...|||
Mouse   672 ----------PDSSKEENDSRWETAVNEVVQS 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seqNP_001027415.1 C2H2 Zn finger 404..430 CDD:275370 7/27 (26%)
Kdm4cNP_001165566.1 JmjN 33..74 CDD:301729
JmjC 194..310 CDD:202224
PHD_SF 660..761 CDD:304600 9/48 (19%)
PHD_SF 770..879 CDD:304600
TUDOR 892..948 CDD:197660
TUDOR 950..1005 CDD:197660
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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