DRSC/TRiP Functional Genomics Resources

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Protein Alignment seq and Kdm4A

DIOPT Version :10

Sequence 1:NP_001027415.1 Gene:seq / 3772396 FlyBaseID:FBgn0028991 Length:882 Species:Drosophila melanogaster
Sequence 2:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster


Alignment Length:98 Identity:26/98 - (26%)
Similarity:44/98 - (44%) Gaps:16/98 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QSRKFEGKIPKLSQTSAATGGATAAAEAS---------TSKSSQGQQQQIVYVNMLPAANTLNGI 58
            ::.|.|.:.|:....|.|..|....||::         :|.||..|.|.:|.:..||   |:..:
  Fly   373 RAAKSEEESPQKRGCSLAGNGCERNAESAEDVDDKASVSSYSSCRQLQPVVKLRKLP---TIASV 434

  Fly    59 PQ-QQQQQQY-ASTDG--NVYQLQNEILCDANG 87
            |: ....::| .:|:.  .|.:|.||:.|...|
  Fly   435 PEPSSAPKRYDFNTEAVVRVKRLWNELPCPDRG 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seqNP_001027415.1 C2H2 Zn finger 404..430 CDD:275370
Kdm4ANP_610331.1 JmjN 17..59 CDD:472837
JmjC 182..298 CDD:396791
Blue background indicates that the domain is not in the aligned region.

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