DRSC/TRiP Functional Genomics Resources

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Protein Alignment seq and Kdm4A

DIOPT Version :9

Sequence 1:NP_001027415.1 Gene:seq / 3772396 FlyBaseID:FBgn0028991 Length:882 Species:Drosophila melanogaster
Sequence 2:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster


Alignment Length:98 Identity:26/98 - (26%)
Similarity:44/98 - (44%) Gaps:16/98 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QSRKFEGKIPKLSQTSAATGGATAAAEAS---------TSKSSQGQQQQIVYVNMLPAANTLNGI 58
            ::.|.|.:.|:....|.|..|....||::         :|.||..|.|.:|.:..||   |:..:
  Fly   373 RAAKSEEESPQKRGCSLAGNGCERNAESAEDVDDKASVSSYSSCRQLQPVVKLRKLP---TIASV 434

  Fly    59 PQ-QQQQQQY-ASTDG--NVYQLQNEILCDANG 87
            |: ....::| .:|:.  .|.:|.||:.|...|
  Fly   435 PEPSSAPKRYDFNTEAVVRVKRLWNELPCPDRG 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seqNP_001027415.1 C2H2 Zn finger 404..430 CDD:275370
Kdm4ANP_610331.1 JmjN 17..59 CDD:301729
JmjC 182..298 CDD:202224
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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