DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment seq and Jade2

DIOPT Version :9

Sequence 1:NP_001027415.1 Gene:seq / 3772396 FlyBaseID:FBgn0028991 Length:882 Species:Drosophila melanogaster
Sequence 2:XP_038941852.1 Gene:Jade2 / 303113 RGDID:1309152 Length:901 Species:Rattus norvegicus


Alignment Length:520 Identity:100/520 - (19%)
Similarity:163/520 - (31%) Gaps:181/520 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 DDDENGMLHVKYEEQSLEHD---PENEHDAE---------------------QEHEYEEYQVIKA 318
            |:||     ||::....||.   |.:|..:|                     |:.|...|::::.
  Rat   423 DNDE-----VKFKSLCQEHSDGGPRSEPSSEPVEPSQAVEDLEKVTLRKQRLQQLEENFYELVEP 482

  Fly   319 EVEAEAAELAAGTTSYTISQ---EQTGSGNTVLSSMVPKSGSAAAAKQKRK----RKTRVIADDE 376
            ...||..:||.....:....   ::..:.|..|  :.||:.......|:.:    |:.::.....
  Rat   483 AEVAERLDLAEALVDFIYQYWKLKRRANANQPL--LTPKTDEVDNLAQQEQDVLYRRLKLFTHLR 545

  Fly   377 QGEYLEKMSVRGLDIARYEHIIDGVAYCLVCAKNDIFKTFKNKYSF-QRHAYLFHEGQNRKIFAC 440
            |            |:.|..::      |.:..:.:     :.|::. :....:||  ...|:...
  Rat   546 Q------------DLERVRNL------CYMVTRRE-----RTKHTICKLQEQIFH--LQMKLIEQ 585

  Fly   441 PICNKEFSRPDKMKMHKKDKHGDVPMPPSATTTPLKADGPPAKRARTARTPRVRKTKDGSTPTKK 505
            .:|.:...|..|.|.:...:.|              .:||                 .||:|.||
  Rat   586 DLCREPSGRRSKGKKNDSKRKG--------------REGP-----------------KGSSPEKK 619

  Fly   506 R--LAQIDSVLDDVQNGESLTMAPVSVSHSQQQQQQQIQHSITTLAPS------------TPSQP 556
            .  .|..:|||.  |.|.| |..|:..:.......|.:|.:...:|.|            .|...
  Rat   620 EKMKAGPESVLG--QLGLS-TSFPIDGTFFNSWLAQSVQITAEDMAMSEWSLNSGHREDPAPGLL 681

  Fly   557 QHQL----QTLPSLDFSGMILPGG-AQLALAN---PGATSSVGLQRGPA---TP----------- 599
            ..:|    :||.|......:.||. |:.|...   |.......||.||:   ||           
  Rat   682 SEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPPLQDGPSARTTPEKPAKKAWAQD 746

  Fly   600 ----NGQPA--PPTTTLIYSNQLELQQALLQQQLQGQSIMIQDQAGNL-VPLQLD-----GTQAI 652
                .|.||  ||..|   |:.|....|                ||:. ||..|:     .::.:
  Rat   747 GKGTQGPPARKPPRRT---SSHLPSSPA----------------AGDCPVPATLESPPTLASEIL 792

  Fly   653 YTTAPQAQRQQTTATYQTTQQQQQQPAQQPAGQ---------AQQQPHYELDNVTYLSSTAAATP 708
            ..|.|.|..........|.       :.:|.|:         :::.|....|..|.|.||.|..|
  Rat   793 DETVPAASDLNVQVPGPTV-------SPKPLGRLRPPREMKVSRKSPGARSDAGTGLPSTVAERP 850

  Fly   709  708
              Rat   851  850

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seqNP_001027415.1 C2H2 Zn finger 404..430 CDD:275370 2/26 (8%)
Jade2XP_038941852.1 EPL1 82..247 CDD:402235
COG5141 209..>578 CDD:227470 30/186 (16%)
PHD_SF 326..436 CDD:419867 5/17 (29%)
PHA03247 <676..852 CDD:223021 44/201 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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