DRSC/TRiP Functional Genomics Resources

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Protein Alignment seq and Kdm4a

DIOPT Version :9

Sequence 1:NP_001027415.1 Gene:seq / 3772396 FlyBaseID:FBgn0028991 Length:882 Species:Drosophila melanogaster
Sequence 2:NP_001155295.1 Gene:Kdm4a / 230674 MGIID:2446210 Length:1064 Species:Mus musculus


Alignment Length:526 Identity:105/526 - (19%)
Similarity:173/526 - (32%) Gaps:129/526 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   407 CAKNDIFKTFKNKYSFQRHAYLFHEGQNRKIFACPICNKEFSR-----------PDKMKMHKKDK 460
            ||::..|.| :....:.:.|.|           |. |.|:..:           |::.|:.|..|
Mouse   285 CAESTNFAT-RRWIEYGKQAVL-----------CS-CRKDMVKISMDVFVRRFQPERYKLWKAGK 336

  Fly   461 HGDV-----PMPPSATTTPLKADGPPAKRARTARTPR--VRKTKDGSTPTKKRLAQIDSVLDDVQ 518
            ...|     |.|.:|..  ||..|....||.:...|.  |.....|.....||......:  ..:
Mouse   337 DSMVIDHTLPTPEAAEF--LKDSGGLTPRAGSEECPEEDVEAADQGEEGDVKRSLAKHRI--GTK 397

  Fly   519 NGESLTMAPVSVSHSQQQQQQQI---QHSIT----TLAPSTPSQPQ-HQLQ-TLPSLDFSGMILP 574
            ........|..||.|:...::::   |:.:|    ||||..|:... .|:: :||..|:|.   |
Mouse   398 RHRVCLEIPQEVSQSELFPKEELSSGQYEMTECPATLAPVRPTHSSVRQVEDSLPFPDYSD---P 459

  Fly   575 GGAQL-ALAN-----------PGATSSVGLQRGPATPNGQPAPPTTTLIYSNQLELQQALLQQQL 627
            ...:. .|.|           |.| :::.|...||:..|:       |::|...:...:.|....
Mouse   460 TEVKFEELKNVKLEEEDEEDEPEA-AALDLSVNPASVGGR-------LVFSGSKKKSSSSLGSTS 516

  Fly   628 QGQSIMIQDQAGNLVPLQLDGTQAIYTTAPQAQRQQTTATYQTTQQQQQQPAQQPAGQAQQQPHY 692
            ...|:....:....|..|......:.|....|:.....||.:.:.::::   ..|...::|    
Mouse   517 SQDSVSSDSETAESVSCQGQEKTGVLTVHSYARGDGKAATGEPSVKKKR---SAPRSISEQ---- 574

  Fly   693 ELDNVT--YLSSTAAATPTSAEQQQQQQQQQHVIGTVQSYQILTPDGLQNFQPKLETAELGDLCP 755
            ||..|.  |:.|......|...:|...:..:|           .|..||......||:|  .|.|
Mouse   575 ELAEVADEYMLSLEENKKTKGRRQPLSKLPRH-----------HPLVLQECGSDDETSE--QLTP 626

  Fly   756 YSQYTFTTHAGAQPTLNANALDAQTQHQQHHQQQQHHHQQQQHHQQTQLLQQQP-------FATH 813
             .:....|.|.|:|.            .|..|.:..:.:.::...:. :.||.|       |.|:
Mouse   627 -EEEAEETEAWAKPL------------SQLWQNRPPNFEAEKEFNEI-MAQQAPHCAVCMIFQTY 677

  Fly   814 HNPHQQFMELKNELLIKGGDAYTLDTASMYHLPFSPTSMINAV---NDVN----------TSSLL 865
            |  ..:|.......    |||......:....|..|.......   .|:|          ||.|:
Mouse   678 H--QVEFGAFSQSC----GDASEPAAQTQRTKPLIPEMCFTTTGCSTDINLSTPYLEEDGTSMLV 736

  Fly   866 ETKEIS 871
            ..|:.|
Mouse   737 SCKKCS 742

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seqNP_001027415.1 C2H2 Zn finger 404..430 CDD:275370 6/22 (27%)
Kdm4aNP_001155295.1 JmjN 13..55 CDD:128818
JmjC 175..291 CDD:334913 2/5 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 354..384 8/29 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 434..489 14/58 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 502..537 5/34 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 549..573 3/26 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 590..643 15/78 (19%)
Interaction with NCOR1. /evidence=ECO:0000250 597..638 12/54 (22%)
PHD_SF 667..766 CDD:389947 16/82 (20%)
ePHD_JMJD2A 775..884 CDD:277183
Tudor_2 902..936 CDD:375553
Tudor_2 960..994 CDD:375553
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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