DRSC/TRiP Functional Genomics Resources

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Protein Alignment seq and LIMCH1

DIOPT Version :9

Sequence 1:NP_001027415.1 Gene:seq / 3772396 FlyBaseID:FBgn0028991 Length:882 Species:Drosophila melanogaster
Sequence 2:XP_011511944.1 Gene:LIMCH1 / 22998 HGNCID:29191 Length:1655 Species:Homo sapiens


Alignment Length:993 Identity:180/993 - (18%)
Similarity:322/993 - (32%) Gaps:286/993 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 QGQQQQIVYVNMLPAAN---TLNGIPQQ-QQQQQYASTDGN---------------VYQLQNEIL 82
            :.|::.:..:...|...   |...:||. :::.:.|..|..               |..|.:|  
Human   714 ESQEEWVCSLGECPRGTEEVTSKQLPQDGKEETESAPRDSERLSKAERSEDSSQPLVCPLASE-- 776

  Fly    83 CDANGHAVTAATASYQTTASSPQQQQQQQQQQQNVATSVADNVVTTISSSSILHTNANTNGVDTL 147
            |:|:|      |.......::|.......:.|:.:..|..|:::...:..|:.||.:|.|....:
Human   777 CEASG------TEEKLEKMTAPAWSGSGLKGQRKLDDSRKDDMMARRTGMSLRHTGSNPNQFLPV 835

  Fly   148 AATQQQQQQQQQQQQQQQQQHYHYITTTGEDGQTPTTIVFENYNGGMPAVSSAAPTPVPVSQANA 212
            ...:||..::..:....:.|.|...|...:|.:  :|.:|:     |.....||..|      ::
Human   836 PFAKQQDVEESSKGLPMKDQRYGPRTPVSDDAE--STSMFD-----MRCEEEAAVQP------HS 887

  Fly   213 PATTTTTALVNTDGTIIEFDGSTYEEYHVLKSEPGSSDCLSNGSSAVAADIIKYDPQ----HGVV 273
            .|......|:|..  :.|.|....::....||...|          |:.|:||.:.:    ..::
Human   888 RARQEQLQLINNQ--LREEDDKWQDDLARWKSRRRS----------VSQDLIKKEEERKKMEKLL 940

  Fly   274 GDEEDDDENGMLHVKYEEQSLEHDPENEHDAEQEHE-YEEYQVIKAEVEAEAAELAAGTTSYTIS 337
            ..|:...|.......|.|...|.:       .:|.| :|.|:..:::.|||.. |......:|||
Human   941 AGEDGTSERRKSIKTYREIVQEKE-------RRERELHEAYKNARSQEEAEGI-LQQYIERFTIS 997

  Fly   338 Q------------EQTGSGNTVLSSMVPKSGSAAAAKQKRKRKTRVIADDEQGEYLEKMSVRGLD 390
            :            |::.|....|||.:.........:|:.....:..|..|  ..:.:.||  ||
Human   998 EAVLERLEMPKILERSHSTEPNLSSFLNDPNPMKYLRQQSLPPPKFTATVE--TTIARASV--LD 1058

  Fly   391 IA--------------RYEHIIDGVAYCLVCAKNDIFKTFK--NKYSFQRHAYLFHEGQNRKIFA 439
            .:              :...::....|.......|:.||||  .|.|.........|.:.|:   
Human  1059 TSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKNSQDVLKTFKVDGKVSVNGETVHREEEKERE--- 1120

  Fly   440 CPICNKEFSRPDKM------KMH------KKD---------KHGDVPMPPSATTTPL-------K 476
            ||......|.....      ::|      |:|         |...||...:|||...       |
Human  1121 CPTVAPAHSLTKSQMFEGVARVHGSPLELKQDNGSIEINIKKPNSVPQELAATTEKTEPNSQEDK 1185

  Fly   477 ADGPPAKRAR---------------TARTPRVRKTKDGSTPTKKRLAQIDSVLDDVQNGESLTMA 526
            .||..:::..               |..:|.|...:..|:|..|         :||         
Human  1186 NDGGKSRKGNIELASSEPQHFTTTVTRCSPTVAFVEFPSSPQLK---------NDV--------- 1232

  Fly   527 PVSVSHSQQQQQQQIQHSIT----------TLAPSTPSQPQHQLQTLPSLDFSGMILPGGAQLAL 581
                  |:::.|::.::.::          .:.|.:| :|:..| |.|.||    .:|...||.|
Human  1233 ------SEEKDQKKPENEMSGKVELVLSQKVVKPKSP-EPEATL-TFPFLD----KMPEANQLHL 1285

  Fly   582 ANPGATSSVGLQRGPATPNGQPAPPTTTLIYSNQLELQQALLQQQLQGQSIMIQDQAGNLVPLQL 646
            .|               .|.|.:|.|.::    .|.:|.:..:.|...||  :...:....|:..
Human  1286 PN---------------LNSQESPGTASV----PLRVQNSWRRSQFFSQS--VDSPSSEKSPVMT 1329

  Fly   647 DGTQAIYTTAPQAQR-------QQTTATYQTTQQQQQQPAQQPAGQAQ------QQPHYELDN-- 696
            ...: .:...|:.:|       |:.....|...|::|...::...:||      ::.:||.:.  
Human  1330 PQFK-FWAWDPEEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKI 1393

  Fly   697 -------VTYLSSTAAATPTSAEQQQQQQQQQHV-IGTVQ----------SYQILTPDGLQNFQP 743
                   .|..||:|....||:...:.......: :|..|          |:|....|.|...:.
Human  1394 IEDTVVPFTVSSSSADQLSTSSSMTEGSGTMNKIDLGNCQDEKQDRRWKKSFQGDDSDLLLKTRE 1458

  Fly   744 KLETAELGDLC---------PYSQ-----YTFTTHAGA----------------QPTLNAN---- 774
            .....|.|.|.         |.|:     :...|.|||                |.|.|..    
Human  1459 SDRLEEKGSLTEGALAHSGNPVSKGVHEDHQLDTEAGAPHCGTNPQLAQDPSQNQQTSNPTHSSE 1523

  Fly   775 -------ALDAQTQHQQHHQQQQHHHQQQQHHQQTQLLQQQPFATHHNPHQQFMELKNELLIKG- 831
                   .||....||.....::.....::|.|........|.....:|::....:..:.|... 
Human  1524 DVKPKTLPLDKSINHQIESPSERRKKSPREHFQAGPFSPCSPTPPGQSPNRYKRSISGKKLCSSC 1588

  Fly   832 ------GDAYTLDTASMY 843
                  |.|..::|.::|
Human  1589 GLPLGKGAAMIIETLNLY 1606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seqNP_001027415.1 C2H2 Zn finger 404..430 CDD:275370 7/27 (26%)
LIMCH1XP_011511944.1 CH 26..138 CDD:237981
DUF4757 250..>311 CDD:292571
DUF4757 813..961 CDD:292571 33/172 (19%)
GBP_C <1340..1377 CDD:303769 6/36 (17%)
LIM 1585..1642 CDD:214528 4/22 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15551
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.100

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