DRSC/TRiP Functional Genomics Resources

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Protein Alignment seq and jmjd-2

DIOPT Version :9

Sequence 1:NP_001027415.1 Gene:seq / 3772396 FlyBaseID:FBgn0028991 Length:882 Species:Drosophila melanogaster
Sequence 2:NP_496969.2 Gene:jmjd-2 / 175080 WormBaseID:WBGene00012982 Length:922 Species:Caenorhabditis elegans


Alignment Length:630 Identity:113/630 - (17%)
Similarity:176/630 - (27%) Gaps:250/630 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 NTLNGIPQQQQQQQYASTDGNVYQLQNE---------ILCDAN-----GHAVTAATASYQTTASS 103
            |.|:|.|...     |.|:|:.|..|.|         ||.|.|     .:.|......|:||  .
 Worm   205 NILHGEPIYG-----ADTEGSFYDAQVEEWNMNRLGTILEDTNYEIKGVNTVYLYFGMYKTT--F 262

  Fly   104 PQQQQQQQQQQQNVATSVADNVVTTISSSSILHTNA-------NTNGVDTLAATQQQQQQQQQQQ 161
            |...:...                 :.|.:.||..|       ::...|.......||...|.:.
 Worm   263 PWHAEDMD-----------------LYSINFLHFGAPKYWFAISSEHADRFERFMSQQFSYQNEY 310

  Fly   162 QQQQQ---QHYHYITTTGEDGQTPTTIVFENYNGGMPAVSSAAPTPVPVSQANAPATTTTTALVN 223
            ..|.:   :|..|:.                             ||..:.||..|   ..|.:..
 Worm   311 APQCKAFLRHKTYLV-----------------------------TPELLRQAGIP---YATMVQR 343

  Fly   224 TDGTIIEFDGSTYEEYHVLKSEPGSSDCLSN-----GSSAVAADI----IKYDPQHGVVGDEEDD 279
            .:..||.|....:..:::..:...|::..|.     |..||..|.    :|.|..|.:.....|:
 Worm   344 PNEFIITFPRGYHMGFNLGYNLAESTNFASQRWIDYGKDAVLCDCNKDSVKIDMTHFMAKYRPDE 408

  Fly   280 DENGMLHVKYEEQSLEHDPENEHDAEQEHEYEEYQVIKAEVEAEAAELAAGTTSYTISQEQTGSG 344
            ......:.....:.| ..|:.:.:..::   ....:..|...|:.|.|.|.:|: |.|...:|| 
 Worm   409 YTTWWTYWYGGGREL-WIPKKKKEVPKK---RRQSLADASKIAKRARLGASSTA-TDSDGSSGS- 467

  Fly   345 NTVLSSMVPKSGSAAAAK---------------------------QKRKRKTRVIADDEQGEYLE 382
                      |||..|.:                           :|.|::|:::..|.:.::.:
 Worm   468 ----------SGSEEATEGSSFMRALPAGYTVHNWQLRPDYDELLRKYKKETKLLRSDTRIDFYQ 522

  Fly   383 KMSVRGLDIARYEHIIDGVAYCLVCA------KNDIFKTFKNKYSFQRHAYLFHEGQNRKIFA-- 439
            :........|.:.|       |.||.      .|.|..|..|              .:|::..  
 Worm   523 EREFNHARRAEWPH-------CAVCQYFQPPHMNAINHTVPN--------------SSRRLIPKW 566

  Fly   440 CPICNKEFSRPDKMKMHKKDKHGDVPMPPSATTTPLKADGPPAKRARTA---------------- 488
            |      ||:.|      ..||.|...||           ||..|..|.                
 Worm   567 C------FSKTD------TKKHEDHHEPP-----------PPLDRLLTCSNCHVTVHSHCCSGGG 608

  Fly   489 ----------------RTPRVRKTKDGSTPTKK-RLAQI-DSVLDDVQNGESLTMAPVS------ 529
                            |.||.|...|....|.. :|.:: ...|...|.|...|.|.|:      
 Worm   609 GGGGDDDDVTSSGEPWRCPRCRNRTDVEIRTTSCQLCELRGGALIPCQIGTDSTWAHVACALFNR 673

  Fly   530 --------------VSHSQQQQQQQIQHSITTLAPSTPSQPQHQL 560
                          |..|.:||.:            ||..|..:|
 Worm   674 RAIFDCPNRPGACFVEPSPRQQSE------------TPRMPPRRL 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seqNP_001027415.1 C2H2 Zn finger 404..430 CDD:275370 7/31 (23%)
jmjd-2NP_496969.2 JmjN 86..129 CDD:128818
JmjC 252..371 CDD:202224 25/169 (15%)
PHD_SF 536..603 CDD:304600 22/110 (20%)
PHD_SF 588..629 CDD:304600 4/40 (10%)
ePHD 642..782 CDD:277046 15/77 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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