DRSC/TRiP Functional Genomics Resources

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Protein Alignment seq and kdm4aa

DIOPT Version :9

Sequence 1:NP_001027415.1 Gene:seq / 3772396 FlyBaseID:FBgn0028991 Length:882 Species:Drosophila melanogaster
Sequence 2:XP_001921829.2 Gene:kdm4aa / 100003413 ZFINID:ZDB-GENE-110609-4 Length:2012 Species:Danio rerio


Alignment Length:982 Identity:181/982 - (18%)
Similarity:330/982 - (33%) Gaps:230/982 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 AEASTSKSSQGQQ-----QQIVYVNMLPAANTLNGIPQQQQQQQYASTDGNVYQL---------- 77
            |||...||.:.::     :||  .:..|..||  |..:.:......:.|.|..::          
Zfish   417 AEAEVEKSVRDEEPSSTSEQI--SSSSPKQNT--GQKRLRSSTDNEAKDDNQVKIEVEEVEKKKA 477

  Fly    78 ---QNEILCDANGHAVTAA------TASYQTTASSPQQQQQQQQQQQNVATSVADNVVTT----I 129
               |||  .|.|.....:|      ......|.:.|.|||:..:.:.:.:...:.:.:||    .
Zfish   478 KLGQNE--TDNNEEQSVSAEPDDEKAEETMETDTPPPQQQECMEAELSTSDPTSSSDITTQQREE 540

  Fly   130 SSSSILHTNANTNGVDTLAATQQQQQQQQQQQQQQ--QQQHYHYITTTGEDGQTPTTIVFENYNG 192
            .||.:..:..:.|.||...|.......|.:...|.  .|.:...||.|......|:.|.....:.
Zfish   541 ESSDVTSSTQSINSVDEDVALGGDVASQSEDVTQSFVVQINPEDITPTDLTDAQPSNITSHPCSS 605

  Fly   193 GMPAVSSAAPTPVPVSQANAPATTTTTALVNTDGTIIEFDG-------STYEEYHVLKSEPGSSD 250
            .:||.|.     :.||.:|....:.:.| ...|||....|.       .:....|:...:|..||
Zfish   606 DIPATSF-----MSVSSSNFSKHSISFA-YTCDGTTEPSDSINLTPRVPSINVAHISDVQPEPSD 664

  Fly   251 CL------SNGSSAVAADI------IKYDPQHGVVGDEEDDDENGMLHVKYEEQSLEHDPENEHD 303
            .:      |:.:|...:|:      :..||:|     :...:...:::|:.|..::        .
Zfish   665 IIVSLKQNSSANSTYTSDVQSDLSNVTVDPEH-----KPSINSTHIINVQSETSNI--------T 716

  Fly   304 AEQEHEYEEYQVIKAEVEAEAAELAAGTTSYTISQEQTGSGNTVLSSMVPKSGSAAAAKQKRKRK 368
            ...|||........::|::|        ||:   :.:.|:.:..:..:.|:....:.:...:...
Zfish   717 ISSEHEPSISSTPMSDVQSE--------TSF---KYEPGNNSAYVCDVKPEHSDISMSPIYKPGV 770

  Fly   369 TRVIADDEQGEYLEKMSVRGLDIARYEHIIDGVAYCLVCAKNDIFKTFKNKYSFQRHAYLFHEGQ 433
            ......|.|.|..|..|....|     ||.|     :....|||....|::.|. ..|:.|.   
Zfish   771 NFAHTSDVQPEPSECESCTNSD-----HICD-----VQSEANDIIINSKDEMSI-NSAHTFD--- 821

  Fly   434 NRKIFACPICNKEFSRPDKMKMHKKD----KHGDVPMPPSATTTPLKAD---------------- 478
                     ...|.|.......||.|    ...|||..|...|..|..|                
Zfish   822 ---------VQPEPSDNTVSLTHKPDISSTSGSDVPSGPGDITDSLGYDPDFNSTHTGHVQSESN 877

  Fly   479 -GPPAK-RARTARTPRVRK----TKDG----------------STPT-----KKRLAQIDSV-LD 515
             .|..| ...:|.|..|:.    ..||                |.|:     .||.:.|||. :|
Zfish   878 NSPKHKLPINSAHTYDVQSGPSDITDGHRFESEFNSTHICDVQSGPSDMSVNSKRKSSIDSAQID 942

  Fly   516 DVQNGESLTMAPVSVSHSQQQQQQQIQHSITTLAPSTPSQPQHQLQTLPSLDFSGMILPGGAQLA 580
            |.|:..|    .:|:...|:......|.......||..|....|..::.|..... :....:.::
Zfish   943 DAQSDPS----DISIGSKQEYSINSAQIDNVQSEPSDISIGSKQESSINSAQIDN-VQSEPSNIS 1002

  Fly   581 LANPGATSSVGLQRGPATPNGQPAPPTTTLIYSNQLELQQALL---QQQLQGQSIMIQDQAGNLV 642
            :::...||....|    ..:.|..|...::...|:|.:..|.:   |....|.|:. .:|..:::
Zfish  1003 ISSKQETSINSTQ----IDDVQSEPSDISISSKNKLRINSAQIDDVQSAPSGISVS-SEQETSII 1062

  Fly   643 PLQLDGTQAIYTTAPQAQRQQTTATYQTTQQQQQQPAQQPAGQAQQQPHYELDNVTYLSSTAAAT 707
            ..|:|..|:.|:....:.:.:.:.....|...|.:|.....|..|:                 :.
Zfish  1063 SAQVDDVQSEYSDISISSKHEPSINSTQTDDIQSEPIDISFGSKQE-----------------SC 1110

  Fly   708 PTSAEQQQQQQQ---------QQHVIGTVQSYQI-LTPDGLQ-NF--QPKLETAELGDLCPYSQY 759
            ..||:....|.:         |:..|.:.|.|.: |.|..:. :|  :|.:.::::.|:  .|:.
Zfish  1111 INSAQMYDVQSEPSDISISSTQETSINSAQMYDVQLEPSDISISFKDKPSINSSQVDDV--QSEP 1173

  Fly   760 TFTTHAGAQPTL--NANALDAQT----------QHQQHHQQQQHHHQQQ------QHHQQTQLLQ 806
            :.......|.|.  :|...|.|:          |....:..|.:..|.:      ..:|:|.:..
Zfish  1174 SDICFGSEQETCINSAQIYDVQSEPSNISFSSKQETSINSTQMYDVQSEPSDISISSNQETSINS 1238

  Fly   807 QQPFATHHNPHQQFMELKNELLIKGGDAYTLDTASMYHLPFSPTSM---INAVNDVNTSSLLETK 868
            .|.:.....|        :::.|......::::..||.:...|:.:   .|....:|::.:.:.:
Zfish  1239 TQMYDVQSEP--------SDISISSNQETSINSTQMYDVQSEPSDISISSNQETSINSTQMHDVQ 1295

  Fly   869 EISYDIS 875
            ....|||
Zfish  1296 SEPSDIS 1302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seqNP_001027415.1 C2H2 Zn finger 404..430 CDD:275370 6/25 (24%)
kdm4aaXP_001921829.2 JmjN 16..58 CDD:128818
JmjC 178..294 CDD:202224
PHD_SF 1618..1714 CDD:304600
PHD_SF 1723..1832 CDD:304600
TUDOR 1847..1902 CDD:197660
TUDOR 1904..1959 CDD:197660
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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