DRSC/TRiP Functional Genomics Resources

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Protein Alignment seq and brpf3b

DIOPT Version :9

Sequence 1:NP_001027415.1 Gene:seq / 3772396 FlyBaseID:FBgn0028991 Length:882 Species:Drosophila melanogaster
Sequence 2:XP_005166793.1 Gene:brpf3b / 100003354 ZFINID:ZDB-GENE-081104-468 Length:1222 Species:Danio rerio


Alignment Length:641 Identity:113/641 - (17%)
Similarity:185/641 - (28%) Gaps:243/641 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SQTSAATGGATAAAEASTSKSSQGQQQQIVYVNMLPAANTLNGIPQQQQQQQYASTDGNVYQL-- 77
            :|:.|:..| |||.|.|..:|....:     :.:.|...||.  ..|.|:......||.::::  
Zfish    13 AQSDASDTG-TAAVEDSQPRSPSPYR-----LKVSPTRETLT--YAQAQKIVEVDLDGRLHRISI 69

  Fly    78 --------QNEI----LCDANGHAVTAATASYQTTASSPQQQQQQQQQQQNVATSVADNVVTTIS 130
                    ::|:    :.:.|.:...:...|..|..|||::             |||:       
Zfish    70 FDPLVVITEDEMTAQDIAECNSNKENSEQTSVSTVVSSPRR-------------SVAN------- 114

  Fly   131 SSSILHTNANTNGVDTLAATQQQQQQQQQQQQQQQQQHYHYITTTGEDGQTPTTIVFENYNGGMP 195
                   ......|..|:::|........|.|.|...:.|:.|.     ..||   |:.:....|
Zfish   115 -------RGKKKDVKQLSSSQNHCSNSHGQSQTQSSGNSHHGTL-----PKPT---FKEHEFYEP 164

  Fly   196 AVSSAAPTPVPVSQANAPATTTTTALVNTDGTIIEFDGSTYEEYHVLKSEPGSSDCLSNGSSAVA 260
            .  .|.|.|                             |.|..|....||...:|.         
Zfish   165 V--EAPPRP-----------------------------SAYYRYIDKSSEDPDTDA--------- 189

  Fly   261 ADIIKYDPQHGVVGDEED----------DDENGMLHVKYEEQSLEHDP-ENEHDAEQEHEYEEYQ 314
                :||.      ||||          .|.:|..|:..:...|..|. |.|...|...:.....
Zfish   190 ----EYDM------DEEDVAWLELVNEKRDSDGQPHISPDTFELLIDRLEKESFLESRSQASSQS 244

  Fly   315 VIKAE------VEAEAAE----LAAGTTSYTISQEQTGSGNTVLSSMVP--KSGS--AAAAKQKR 365
            ||..:      ::.|...    |.....:..:.||..|         ||  ..|.  .....|..
Zfish   245 VIDEDAFCCVCLDDECLNSNVILFCDICNLAVHQECYG---------VPYIPEGQWLCRCCLQSP 300

  Fly   366 KRKTRVIADDEQGEYLEKMSVRGLDIARYEHIIDGVAYCLVCAKNDIFKTFKNKYSFQRHAYLFH 430
            .|....:....:|...::.|     ..|:.|::..:....||..|.:|..             ..
Zfish   301 SRPVDCVLCPNRGGAFKQTS-----DGRWAHVVCAIWIPEVCFANTVFLE-------------PI 347

  Fly   431 EGQN-----RKIFACPICNKEFSRPDKMKMHKKDKHGD------------VPMPP------SATT 472
            ||.:     |....|.:| |:......::.||.:.:..            :.:.|      :.||
Zfish   348 EGVDNIPPARWKLTCYLC-KQKGCGASIQCHKANCYTAFHVTCAQRAGLFMKIDPVRETTVNGTT 411

  Fly   473 TPLK------ADGPP-----------------AKRARTA--RTPRVRKTK-----DGSTPTKKRL 507
            ..:|      |..|.                 |.|.|:|  :||.::|.|     |...|.||  
Zfish   412 FSVKKTAFCEAHSPAVNGSDDEETGGRVLGCRANRGRSAYMQTPELKKQKGSNKVDSKQPQKK-- 474

  Fly   508 AQIDSVLDDVQNGESLTMAPVSVSHSQQQQQQQIQHSITTLAPSTPSQPQHQLQTL 563
                                        .:::::....|||..:.|..|..:|..:
Zfish   475 ----------------------------GKKEEVSKKTTTLLVTVPEIPAQRLNKI 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
seqNP_001027415.1 C2H2 Zn finger 404..430 CDD:275370 4/25 (16%)
brpf3bXP_005166793.1 EPL1 63..231 CDD:287484 43/252 (17%)
PHD_BRPF 249..302 CDD:277047 9/61 (15%)
PHD_SF 306..423 CDD:304600 20/135 (15%)
Kinesin-relat_1 535..>594 CDD:289481
Bromo_brd1_like 608..705 CDD:99944
BR140_related 1091..1206 CDD:99900
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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