DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr3K and TFIIS

DIOPT Version :10

Sequence 1:NP_001027443.1 Gene:Polr3K / 3772344 FlyBaseID:FBgn0061362 Length:108 Species:Drosophila melanogaster
Sequence 2:NP_181390.1 Gene:TFIIS / 818438 AraportID:AT2G38560 Length:378 Species:Arabidopsis thaliana


Alignment Length:63 Identity:26/63 - (41%)
Similarity:37/63 - (58%) Gaps:9/63 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 LKEVDHVLGGKAAWENVDSTDA-ECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWR 107
            |.:.:..|..||      |||. :|..||.::..:.|:|||||||||||:..|.|  |::.|:
plant   322 LFDCERGLAAKA------STDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVN--CDNHWK 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr3KNP_001027443.1 RPB9 4..107 CDD:441202 25/61 (41%)
Zn-ribbon_RPC11 61..108 CDD:259794 22/48 (46%)
TFIISNP_181390.1 TFSII 21..378 CDD:273592 26/63 (41%)

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