DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Polr3K and TfIIS

DIOPT Version :10

Sequence 1:NP_001027443.1 Gene:Polr3K / 3772344 FlyBaseID:FBgn0061362 Length:108 Species:Drosophila melanogaster
Sequence 2:NP_476967.1 Gene:TfIIS / 34883 FlyBaseID:FBgn0010422 Length:313 Species:Drosophila melanogaster


Alignment Length:92 Identity:28/92 - (30%)
Similarity:47/92 - (51%) Gaps:9/92 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 FTCN--TCPYISKIR-RKISTKTFPRLKE---VDHVLGGKAAWENVDSTD-AECPTCGHKRAYFM 80
            |.|.  |...::|:. .::::....:|:|   .:.:...:.|......|| .:|..|..:...:.
  Fly   222 FMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYN 286

  Fly    81 QIQTRSADEPMTTFYKCCNHECNHTWR 107
            |:||||||||||||..|  :||.:.|:
  Fly   287 QLQTRSADEPMTTFVMC--NECGNRWK 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr3KNP_001027443.1 RPB9 4..107 CDD:441202 27/90 (30%)
Zn-ribbon_RPC11 61..108 CDD:259794 21/48 (44%)
TfIISNP_476967.1 TFSII 5..313 CDD:273592 28/92 (30%)

Return to query results.
Submit another query.