DRSC/TRiP Functional Genomics Resources

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Protein Alignment LSm-4 and T07C4.12

DIOPT Version :10

Sequence 1:NP_001027237.1 Gene:LSm-4 / 3772280 FlyBaseID:FBgn0067622 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001370219.1 Gene:T07C4.12 / 4363045 WormBaseID:WBGene00044891 Length:144 Species:Caenorhabditis elegans


Alignment Length:117 Identity:26/117 - (22%)
Similarity:45/117 - (38%) Gaps:27/117 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 KGVVKHHELRKCLMDDLNLTE-----EYVEDICKVLLNHRDVLSKNFSDTKMDRVKMSKLQWRIN 145
            |.::::.||.|. ...:|.|:     |.::|..||.| .|.|..|.....|.::    .:.|.:|
 Worm    32 KNIIRYGELFKA-CHAINSTDFIQKSEDLKDEEKVAL-ERIVEQKLAESAKNEK----DIAWNVN 90

  Fly   146 ISLSLN--------TVQIDKPTIVLHFKLQNKEYRTLELPLSMFQQVRYNIA 189
            |.::.:        .:.|..||:        ......|..:..|.|.|..:|
 Worm    91 IVVANSYVAKSLRPVINIQMPTV--------GGDTNFEFDIDSFAQFRQQLA 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LSm-4NP_001027237.1 Commd 101..205 CDD:471425 22/102 (22%)
T07C4.12NP_001370219.1 COMM_domain 83..136 CDD:462125 11/64 (17%)

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