DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LSm-4 and commd5

DIOPT Version :9

Sequence 1:NP_001027237.1 Gene:LSm-4 / 3772280 FlyBaseID:FBgn0067622 Length:205 Species:Drosophila melanogaster
Sequence 2:XP_031746561.1 Gene:commd5 / 100380154 XenbaseID:XB-GENE-952087 Length:223 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LSm-4NP_001027237.1 HCaRG 22..196 CDD:284632
commd5XP_031746561.1 Commd5_HCaRG 114..223 CDD:240101
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I11712
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 67 1.000 Inparanoid score I5169
OMA 1 1.010 - - QHG48482
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0008039
OrthoInspector 1 1.000 - - oto103373
Panther 1 1.100 - - LDO PTHR15666
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5085
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.100

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