DRSC/TRiP Functional Genomics Resources

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Protein Alignment fabp and fabp3

DIOPT Version :10

Sequence 1:NP_001027179.1 Gene:fabp / 3772232 FlyBaseID:FBgn0037913 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_001015823.1 Gene:fabp3 / 548540 XenbaseID:XB-GENE-974423 Length:131 Species:Xenopus tropicalis


Alignment Length:112 Identity:52/112 - (46%)
Similarity:73/112 - (65%) Gaps:2/112 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLG 67
            |.| .::|.:|:|||||||.||||..||::||...||..::|:||...:.|.||||.:.:||||.
 Frog     4 FAG-TWRLVESKNFDEYMKGLGVGFATRQIGNVTKPTTIISLDGDKVKVQTQSTFKNTEVSFKLN 67

  Fly    68 VEFDEETLDGRNVKSIITLDGNKLTQEQKGD-KPTTIVREFTDNELI 113
            .||||.|.|.|..||.:|::..|:...||.| |.|.::||...::|:
 Frog    68 EEFDECTADDRKCKSFVTIEDGKMKHVQKWDGKETILIREVDGDKLV 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fabpNP_001027179.1 FABP_pancrustacea 2..116 CDD:381252 52/112 (46%)
fabp3NP_001015823.1 lipocalin_FABP 4..130 CDD:471979 52/112 (46%)

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