DRSC/TRiP Functional Genomics Resources

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Protein Alignment fabp and rbp2b

DIOPT Version :9

Sequence 1:NP_001027179.1 Gene:fabp / 3772232 FlyBaseID:FBgn0037913 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_001002307.1 Gene:rbp2b / 432384 ZFINID:ZDB-GENE-040715-7 Length:135 Species:Danio rerio


Alignment Length:101 Identity:40/101 - (39%)
Similarity:63/101 - (62%) Gaps:3/101 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFK 65
            :.|.| |::|:.|:|.:.|:|.|.:....||:...|:||...|.:||.:.:.|.||||...:||.
Zfish     3 VDFTG-KWELESSKNLENYLKALDIDFAIRKIAVHLTPTKIFTQDGDNFVIKTQSTFKNYELSFT 66

  Fly    66 LGVEFDEET--LDGRNVKSIITLDGNKLTQEQKGDK 99
            :|||.:|.|  .|.|.:|:::|.:|:||...|||:|
Zfish    67 IGVEKEESTKGFDNRALKTLVTWEGDKLVAVQKGEK 102

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fabpNP_001027179.1 Lipocalin 7..>107 CDD:278490 38/95 (40%)
rbp2bNP_001002307.1 Lipocalin 5..>96 CDD:304412 36/91 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592449
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11955
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.940

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