DRSC/TRiP Functional Genomics Resources

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Protein Alignment fabp and Fabp2

DIOPT Version :9

Sequence 1:NP_001027179.1 Gene:fabp / 3772232 FlyBaseID:FBgn0037913 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_037200.1 Gene:Fabp2 / 25598 RGDID:2591 Length:132 Species:Rattus norvegicus


Alignment Length:116 Identity:40/116 - (34%)
Similarity:71/116 - (61%) Gaps:4/116 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFK 65
            |:|.| .:|:|::||::::|:::|:.:|.||:|...:..:.:|.||:.:|:..:|.|:...:.|:
  Rat     1 MAFDG-TWKVDRNENYEKFMEKMGINVVKRKLGAHDNLKLTITQEGNKFTVKESSNFRNIDVVFE 64

  Fly    66 LGVEFDEETLDGRNVKSIITLDGNKLTQEQK---GDKPTTIVREFTDNELI 113
            |||:|.....||..:....|::||||..:.|   ..|....|||.:.||||
  Rat    65 LGVDFAYSLADGTELTGTWTMEGNKLVGKFKRVDNGKELIAVREISGNELI 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fabpNP_001027179.1 Lipocalin 7..>107 CDD:278490 32/102 (31%)
Fabp2NP_037200.1 FABP2 2..131 CDD:381220 39/115 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4015
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11955
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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