DRSC/TRiP Functional Genomics Resources

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Protein Alignment fabp and lbp-6

DIOPT Version :9

Sequence 1:NP_001027179.1 Gene:fabp / 3772232 FlyBaseID:FBgn0037913 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_491926.1 Gene:lbp-6 / 172390 WormBaseID:WBGene00002258 Length:135 Species:Caenorhabditis elegans


Alignment Length:118 Identity:58/118 - (49%)
Similarity:77/118 - (65%) Gaps:5/118 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLG 67
            ||| ::||..||||:|||||:||||:|||...:|.||:|:.:|||.:.....||||.:.:|||||
 Worm     5 FVG-RWKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKNTTLSFKLG 68

  Fly    68 VEFDEETLDGRNVKSIITLDGNKLTQEQK----GDKPTTIVREFTDNELITLI 116
            .||||.|.|||.|||::..:..|....||    .||.:.|.|....::|||.:
 Worm    69 QEFDETTPDGRTVKSVVNFENGKFIHIQKKIKDSDKESIITRWLEGDKLITTL 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fabpNP_001027179.1 Lipocalin 7..>107 CDD:278490 52/103 (50%)
lbp-6NP_491926.1 Lipocalin 6..122 CDD:278490 57/117 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 103 1.000 Domainoid score I4253
eggNOG 1 0.900 - - E1_KOG4015
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 108 1.000 Inparanoid score I3481
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45877
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000407
OrthoInspector 1 1.000 - - otm14279
orthoMCL 1 0.900 - - OOG6_102739
Panther 1 1.100 - - O PTHR11955
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2523
SonicParanoid 1 1.000 - - X240
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.900

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