DRSC/TRiP Functional Genomics Resources

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Protein Alignment fabp and crabp1a

DIOPT Version :9

Sequence 1:NP_001027179.1 Gene:fabp / 3772232 FlyBaseID:FBgn0037913 Length:157 Species:Drosophila melanogaster
Sequence 2:NP_878278.1 Gene:crabp1a / 171479 ZFINID:ZDB-GENE-020320-3 Length:138 Species:Danio rerio


Alignment Length:121 Identity:49/121 - (40%)
Similarity:76/121 - (62%) Gaps:8/121 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLS--PTVEVTLEGDTYTLTTTSTFKTSAISF 64
            :|.| .:|:..||||||.:|.|||..:.||:..:.:  |.||:..:|:.:.:.|::|.:|:.|:|
Zfish     4 NFAG-TWKMKSSENFDELLKALGVNAMLRKVAGAAAAKPHVEIRQDGEQFYIKTSTTVRTTEINF 67

  Fly    65 KLGVEFDEETLDGRNVKSIITLD-GNKLTQEQ---KGDKPTTI-VREFTDNELITL 115
            ::|.||||||:|||..||:.|.: .||:..:|   .||.|.|. .||...:|||.:
Zfish    68 RVGEEFDEETVDGRKCKSLATWETENKMYCKQTLVDGDGPVTYWSRELRGDELILI 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fabpNP_001027179.1 Lipocalin 7..>107 CDD:278490 43/106 (41%)
crabp1aNP_878278.1 Lipocalin 6..138 CDD:278490 48/119 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592454
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102739
Panther 1 1.100 - - O PTHR11955
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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